LOCUS VTS00005.1 523 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase sigma70 : RNA polymerase sigma factor SigA OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=sigA PE=3 SV=1: Sigma70_r1_2: Sigma70_r2: Sigma70_r3: Sigma70_r4 protein. ACCESSION LR593886-7263 PROTEIN_ID VTS00005.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_83290" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|D2R6R0|D2R6R0_PIRSD ; ALN/Q_length_ratio=0.862 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=sigA PE=3 SV=1 ; EVALUE=1e-105 ; Q/S_length_ratio=0.961" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|L0DAT7|L0DAT7_SINAD ; ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=sigA PE=3 SV=1 ; EVALUE=1e-104 ; Q/S_length_ratio=0.941" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|E8R2V4|E8R2V4_ISOPI ; ALN/Q_length_ratio=0.876 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=sigA PE=3 SV=1 ; EVALUE=1e-104 ; Q/S_length_ratio=0.883" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|A6C4Z7|A6C4Z7_9PLAN ; ALN/Q_length_ratio=0.912 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Planctomyces maris DSM 8797 GN=sigA PE=3 SV=1 ; EVALUE=1e-102 ; Q/S_length_ratio=0.932" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|A3ZZZ4|A3ZZZ4_9PLAN ; ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Blastopirellula marina DSM 3645 GN=sigA PE=3 SV=1 ; EVALUE=1e-102 ; Q/S_length_ratio=0.922" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|M2AWI6|M2AWI6_9PLAN ; ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula europaea 6C GN=sigA PE=3 SV=1 ; EVALUE=1e-99 ; Q/S_length_ratio=0.922" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|M5SSX9|M5SSX9_9PLAN ; ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula europaea SH398 GN=sigA PE=3 SV=1 ; EVALUE=1e-99 ; Q/S_length_ratio=0.922" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|D2QZ41|D2QZ41_PIRSD ; ALN/Q_length_ratio=0.950 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=sigA PE=3 SV=1 ; EVALUE=3e-99 ; Q/S_length_ratio=0.998" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|L7CCA8|L7CCA8_RHOBT ; ALN/Q_length_ratio=0.887 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula baltica SWK14 GN=sigA PE=3 SV=1 ; EVALUE=7e-99 ; Q/S_length_ratio=0.922" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|Q7UQG1|Q7UQG1_RHOBA ; ALN/Q_length_ratio=0.887 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula baltica (strain SH1) GN=sigA PE=3 SV=1 ; EVALUE=7e-99 ; Q/S_length_ratio=0.922" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|K5DET9|K5DET9_RHOBT ; ALN/Q_length_ratio=0.887 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula baltica SH28 GN=sigA PE=3 SV=1 ; EVALUE=7e-99 ; Q/S_length_ratio=0.922" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|F2AVR1|F2AVR1_RHOBT ; ALN/Q_length_ratio=0.887 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula baltica WH47 GN=sigA PE=3 SV=1 ; EVALUE=1e-98 ; Q/S_length_ratio=0.922" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|D5SND9|D5SND9_PLAL2 ; ALN/Q_length_ratio=0.987 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=sigA PE=3 SV=1 ; EVALUE=6e-98 ; Q/S_length_ratio=0.951" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|M5TGM0|M5TGM0_9PLAN ; ALN/Q_length_ratio=0.920 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula sp. SWK7 GN=sigA PE=3 SV=1 ; EVALUE=8e-98 ; Q/S_length_ratio=0.873" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|M5RK64|M5RK64_9PLAN ; ALN/Q_length_ratio=0.941 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodopirellula maiorica SM1 GN=RMSM_03370 PE=3 SV=1 ; EVALUE=4e-97 ; Q/S_length_ratio=1.006" /note="Pfam_scan:hit_1 (71..106); Pfam:PF00140.15:Sigma70_r1_2; Pfam_type:Family;HMM_aln_Length:29; HMM_Length:37; EVALUE:5.1e-10; BITSCORE: 38.8" /note="Pfam_scan:hit_2 (287..357); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71; EVALUE:3e-18; BITSCORE: 65.2" /note="Pfam_scan:hit_3 (366..443); Pfam:PF04539.11:Sigma70_r3; Pfam_type:Family;HMM_aln_Length:75; HMM_Length:78; EVALUE:1.2e-15; BITSCORE: 57.0" /note="Pfam_scan:hit_4 (455..508); Pfam:PF04545.11:Sigma70_r4; Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:50; EVALUE:1.8e-19; BITSCORE: 68.7" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MNRMTHNDEL NDQPVNELPH DERVPQDERE DSDDDLADDS EESDEDTALE PEEASGDSEA 61 ASEDEYAGGP DDALGLYLRQ MGSIPLLNRE RELALAKRLE HHRNRFRSAA LLCPRLLVRV 121 LEKFEQIAAG QTPIDPNIDA YSSADLRLTR AQILARLGTD LPTLRVLLGQ DSVVFAAGVR 181 DEFRGDHSAW QRDRFHRLAK CRRLVSELSP RTELLERWTD ELNDLADELK HLAIAQSEVG 241 CPADRIKQTK LLRDAECGAS MTTDELAALI RVLRKRRLAY QAVRKELAEA NLRLVVSIAK 301 NYRNRGLPFS DLIQEGNRGL MRAVDKYEWR LEFKFGTYAT WWIRQGITRA LHDNARTVRV 361 PCHQISLLSR MEKTRGELTA ATGREPTTEE LAAALDIKPE DARSLRIVGR HPVSLNDAVG 421 GEGERALEDF LSDGQIPNPG EHVDANLLKE RIGEVLKSLA PREREVIELR FGLKDGTPRT 481 LDEVAKQYGI TRERIRQIEA RGLLKLRQPT RSCRLEEFAD ENE //