LOCUS VTR99374.1 692 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-7053
PROTEIN_ID VTR99374.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_85390"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.334 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=5e-39 ;
Q/S_length_ratio=1.632"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.371 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=1.236"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.353 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=5e-33 ;
Q/S_length_ratio=0.564"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.374 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=8e-33 ;
Q/S_length_ratio=1.142"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.393 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=9e-33 ;
Q/S_length_ratio=0.986"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.367 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=1e-31 ;
Q/S_length_ratio=1.390"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.347 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=1e-31 ;
Q/S_length_ratio=1.436"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.393 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=6e-31 ;
Q/S_length_ratio=0.628"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.364 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=7e-31 ;
Q/S_length_ratio=0.722"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.390 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=0.775"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.345 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=4e-30 ;
Q/S_length_ratio=1.381"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.360 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=7e-30 ;
Q/S_length_ratio=1.159"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DD82|L0DD82_SINAD ;
ALN/Q_length_ratio=0.351 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2507 PE=4 SV=1 ; EVALUE=1e-29 ;
Q/S_length_ratio=0.769"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.494 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=2e-29 ;
Q/S_length_ratio=1.569"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DHB1|L0DHB1_SINAD ;
ALN/Q_length_ratio=0.403 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4458 PE=4 SV=1 ; EVALUE=1e-28 ;
Q/S_length_ratio=0.710"
/note="Pfam_scan:hit_1 (40..109);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71;
EVALUE:1.3e-10; BITSCORE: 40.7"
/note="Pfam_scan:hit_2 (129..182);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:1e-09; BITSCORE: 37.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSRSAVALAR SIVPRIVPAP DAALLKTFIA SRTDDTFAEL VRRHGPMVLA VCNRVLADEH
61 DAEDAFQAVF IVLARKAGTI RGTNLAAWLH GVAARTAKGL RVTRKRRRKY ERATRERKPT
121 EAPADHDLAG VIDEELANLS EAYREAIVLC ELRGLSRKRA AVELGIPEGT LSSRLAGAKR
181 KLAERLSARG LAPSIVAGAL LAPNAVSAQL LQATAAAVRG AAGSAASATA ATVVKAMLFD
241 QLRPAVLAAA VCLTIVCGGL AVTHSSDSPP DGSAHVLAAR QVADPVDLVK KLGSDDFAGR
301 EAAHKRLRAV GLKAEPALRA GLKSEDPEIR TRCAELLTAI RKDALDALVK DFDPAKDTEP
361 DHPIWARFKT IAGADRAARA LFAELIADPH RRQLLDDADR DPVGAGKLYA AEVKAYYVYV
421 QKLWQKQLER LNNPKAPAPQ ERPWADELVV LYLGTYSQSA RAVSDNLENQ LFRKWDAALT
481 GSAGPAVRRV FTAWFALRDH ELVIEGGLNA IGRDRMTEAL PLLRKLVADE KTDPDRRAQA
541 ILTIGMLGTR DDLSLLRRVA EAPAANKPHT KWSVILKGRE ELDFLWHGVK FGEKVTQEQW
601 AEAWRKADVR EGDRSLADCA WAAAVKLAGG KPAELGFLCP HILDGGKPDP DWFYSPRIHG
661 FPDAKARATA HKKAREWLDG REKVAPPVPS AR
//