LOCUS VTR99374.1 692 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma factor : RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein. ACCESSION LR593886-7053 PROTEIN_ID VTR99374.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_85390" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|L0DGG0|L0DGG0_SINAD ; ALN/Q_length_ratio=0.334 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1 ; EVALUE=5e-39 ; Q/S_length_ratio=1.632" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|L0D6V6|L0D6V6_SINAD ; ALN/Q_length_ratio=0.371 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-34 ; Q/S_length_ratio=1.236" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|L0DFV7|L0DFV7_SINAD ; ALN/Q_length_ratio=0.353 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3442 PE=4 SV=1 ; EVALUE=5e-33 ; Q/S_length_ratio=0.564" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|L0DPR4|L0DPR4_SINAD ; ALN/Q_length_ratio=0.374 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6601 PE=4 SV=1 ; EVALUE=8e-33 ; Q/S_length_ratio=1.142" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|L0DHG5|L0DHG5_SINAD ; ALN/Q_length_ratio=0.393 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3888 PE=4 SV=1 ; EVALUE=9e-33 ; Q/S_length_ratio=0.986" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|L0DT29|L0DT29_SINAD ; ALN/Q_length_ratio=0.367 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7487 PE=4 SV=1 ; EVALUE=1e-31 ; Q/S_length_ratio=1.390" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|L0D9E1|L0D9E1_SINAD ; ALN/Q_length_ratio=0.347 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0869 PE=4 SV=1 ; EVALUE=1e-31 ; Q/S_length_ratio=1.436" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|L0DDR3|L0DDR3_SINAD ; ALN/Q_length_ratio=0.393 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2497 PE=4 SV=1 ; EVALUE=6e-31 ; Q/S_length_ratio=0.628" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|L0DKL4|L0DKL4_SINAD ; ALN/Q_length_ratio=0.364 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5058 PE=4 SV=1 ; EVALUE=7e-31 ; Q/S_length_ratio=0.722" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|L0DKD8|L0DKD8_SINAD ; ALN/Q_length_ratio=0.390 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-30 ; Q/S_length_ratio=0.775" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|L0D7L2|L0D7L2_SINAD ; ALN/Q_length_ratio=0.345 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0185 PE=4 SV=1 ; EVALUE=4e-30 ; Q/S_length_ratio=1.381" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|L0DR85|L0DR85_SINAD ; ALN/Q_length_ratio=0.360 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7453 PE=4 SV=1 ; EVALUE=7e-30 ; Q/S_length_ratio=1.159" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|L0DD82|L0DD82_SINAD ; ALN/Q_length_ratio=0.351 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2507 PE=4 SV=1 ; EVALUE=1e-29 ; Q/S_length_ratio=0.769" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|L0DJM8|L0DJM8_SINAD ; ALN/Q_length_ratio=0.494 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4894 PE=4 SV=1 ; EVALUE=2e-29 ; Q/S_length_ratio=1.569" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|L0DHB1|L0DHB1_SINAD ; ALN/Q_length_ratio=0.403 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4458 PE=4 SV=1 ; EVALUE=1e-28 ; Q/S_length_ratio=0.710" /note="Pfam_scan:hit_1 (40..109); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71; EVALUE:1.3e-10; BITSCORE: 40.7" /note="Pfam_scan:hit_2 (129..182); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54; EVALUE:1e-09; BITSCORE: 37.6" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MSRSAVALAR SIVPRIVPAP DAALLKTFIA SRTDDTFAEL VRRHGPMVLA VCNRVLADEH 61 DAEDAFQAVF IVLARKAGTI RGTNLAAWLH GVAARTAKGL RVTRKRRRKY ERATRERKPT 121 EAPADHDLAG VIDEELANLS EAYREAIVLC ELRGLSRKRA AVELGIPEGT LSSRLAGAKR 181 KLAERLSARG LAPSIVAGAL LAPNAVSAQL LQATAAAVRG AAGSAASATA ATVVKAMLFD 241 QLRPAVLAAA VCLTIVCGGL AVTHSSDSPP DGSAHVLAAR QVADPVDLVK KLGSDDFAGR 301 EAAHKRLRAV GLKAEPALRA GLKSEDPEIR TRCAELLTAI RKDALDALVK DFDPAKDTEP 361 DHPIWARFKT IAGADRAARA LFAELIADPH RRQLLDDADR DPVGAGKLYA AEVKAYYVYV 421 QKLWQKQLER LNNPKAPAPQ ERPWADELVV LYLGTYSQSA RAVSDNLENQ LFRKWDAALT 481 GSAGPAVRRV FTAWFALRDH ELVIEGGLNA IGRDRMTEAL PLLRKLVADE KTDPDRRAQA 541 ILTIGMLGTR DDLSLLRRVA EAPAANKPHT KWSVILKGRE ELDFLWHGVK FGEKVTQEQW 601 AEAWRKADVR EGDRSLADCA WAAAVKLAGG KPAELGFLCP HILDGGKPDP DWFYSPRIHG 661 FPDAKARATA HKKAREWLDG REKVAPPVPS AR //