LOCUS VTR99318.1 215 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase ecf-type sigma factor
: RNA polymerase, sigma-24 subunit, ECF subfamily OS=Isosphaera
pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_0099
PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-7034
PROTEIN_ID VTR99318.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_85580"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|E8R5F5|E8R5F5_ISOPI ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_0099 PE=4
SV=1 ; EVALUE=2e-59 ; Q/S_length_ratio=0.771"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DJZ8|L0DJZ8_SINAD ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5016 PE=4 SV=1 ; EVALUE=3e-58 ;
Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A3ZRZ3|A3ZRZ3_9PLAN ;
ALN/Q_length_ratio=0.907 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Blastopirellula marina DSM 3645
GN=DSM3645_12881 PE=4 SV=1 ; EVALUE=5e-57 ;
Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D2R3P6|D2R3P6_PIRSD ;
ALN/Q_length_ratio=0.884 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_2330
PE=4 SV=1 ; EVALUE=3e-56 ; Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5RM56|M5RM56_9PLAN ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula maiorica
SM1 GN=RMSM_02693 PE=4 SV=1 ; EVALUE=5e-54 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F2ANX7|F2ANX7_RHOBT ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_01092 PE=4 SV=1 ; EVALUE=4e-53 ;
Q/S_length_ratio=0.931"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5SH67|M5SH67_9PLAN ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula europaea SH398
GN=RESH_02366 PE=4 SV=1 ; EVALUE=4e-53 ;
Q/S_length_ratio=0.931"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L7CBA3|L7CBA3_RHOBT ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_05188 PE=4 SV=1 ; EVALUE=4e-53 ;
Q/S_length_ratio=0.931"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|K5D2C8|K5D2C8_RHOBT ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica SH28
GN=RBSH_03910 PE=4 SV=1 ; EVALUE=5e-53 ;
Q/S_length_ratio=0.931"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7UIR6|Q7UIR6_RHOBA ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica (strain
SH1) GN=RB12372 PE=4 SV=1 ; EVALUE=6e-53 ;
Q/S_length_ratio=0.888"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5TZ32|M5TZ32_9PLAN ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula sallentina SM41
GN=RSSM_04072 PE=4 SV=1 ; EVALUE=9e-53 ;
Q/S_length_ratio=0.874"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M2AY85|M2AY85_9PLAN ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula europaea
6C GN=RE6C_01534 PE=4 SV=1 ; EVALUE=1e-52 ;
Q/S_length_ratio=0.931"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5SYH3|M5SYH3_9PLAN ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula sp. SWK7
GN=RRSWK_05689 PE=4 SV=1 ; EVALUE=1e-51 ;
Q/S_length_ratio=0.919"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|X0YX27|X0YX27_9ZZZZ ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_S40208 (Fragment) OS=marine
sediment metagenome GN=S01H1_81281 PE=4 SV=1 ;
EVALUE=3e-43 ; Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|X1IJ07|X1IJ07_9ZZZZ ;
ALN/Q_length_ratio=0.874 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S03H2_S18219 OS=marine sediment
metagenome GN=S03H2_54365 PE=4 SV=1 ; EVALUE=6e-40 ;
Q/S_length_ratio=1.059"
/note="Pfam_scan:hit_1 (30..98);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:1.3e-17; BITSCORE: 63.1"
/note="Pfam_scan:hit_2 (139..192);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:53; HMM_Length:54;
EVALUE:9.1e-16; BITSCORE: 57.0"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MLDPIRHPPD TDEQLLTRLR AGERDVFGTL VRRYERELFG YLRRYLGDDD LADDVFQNTF
61 VQVYLKIQQY EPGRPVRPWL YAIATNQAID ALRRRNRRAD QRADAVTSSD EDGQNRPLFE
121 LLPTPGDGPP ESADRAEQRE LVRAAVDRLP DLLRQVVVLA YFQGLKYRDV ADALDIPVGT
181 VKSRLHAALA RLTEDWNASQ ESGTGTQEAV QIPNV
//