LOCUS VTR99318.1 215 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase ecf-type sigma factor : RNA polymerase, sigma-24 subunit, ECF subfamily OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_0099 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein. ACCESSION LR593886-7034 PROTEIN_ID VTR99318.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_85580" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|E8R5F5|E8R5F5_ISOPI ; ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_0099 PE=4 SV=1 ; EVALUE=2e-59 ; Q/S_length_ratio=0.771" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|L0DJZ8|L0DJZ8_SINAD ; ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5016 PE=4 SV=1 ; EVALUE=3e-58 ; Q/S_length_ratio=1.019" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|A3ZRZ3|A3ZRZ3_9PLAN ; ALN/Q_length_ratio=0.907 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Blastopirellula marina DSM 3645 GN=DSM3645_12881 PE=4 SV=1 ; EVALUE=5e-57 ; Q/S_length_ratio=1.019" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|D2R3P6|D2R3P6_PIRSD ; ALN/Q_length_ratio=0.884 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_2330 PE=4 SV=1 ; EVALUE=3e-56 ; Q/S_length_ratio=1.005" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|M5RM56|M5RM56_9PLAN ; ALN/Q_length_ratio=0.912 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Rhodopirellula maiorica SM1 GN=RMSM_02693 PE=4 SV=1 ; EVALUE=5e-54 ; Q/S_length_ratio=1.000" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|F2ANX7|F2ANX7_RHOBT ; ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Rhodopirellula baltica WH47 GN=RBWH47_01092 PE=4 SV=1 ; EVALUE=4e-53 ; Q/S_length_ratio=0.931" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|M5SH67|M5SH67_9PLAN ; ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Rhodopirellula europaea SH398 GN=RESH_02366 PE=4 SV=1 ; EVALUE=4e-53 ; Q/S_length_ratio=0.931" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|L7CBA3|L7CBA3_RHOBT ; ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Rhodopirellula baltica SWK14 GN=RBSWK_05188 PE=4 SV=1 ; EVALUE=4e-53 ; Q/S_length_ratio=0.931" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|K5D2C8|K5D2C8_RHOBT ; ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Rhodopirellula baltica SH28 GN=RBSH_03910 PE=4 SV=1 ; EVALUE=5e-53 ; Q/S_length_ratio=0.931" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|Q7UIR6|Q7UIR6_RHOBA ; ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Rhodopirellula baltica (strain SH1) GN=RB12372 PE=4 SV=1 ; EVALUE=6e-53 ; Q/S_length_ratio=0.888" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|M5TZ32|M5TZ32_9PLAN ; ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Rhodopirellula sallentina SM41 GN=RSSM_04072 PE=4 SV=1 ; EVALUE=9e-53 ; Q/S_length_ratio=0.874" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|M2AY85|M2AY85_9PLAN ; ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Rhodopirellula europaea 6C GN=RE6C_01534 PE=4 SV=1 ; EVALUE=1e-52 ; Q/S_length_ratio=0.931" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|M5SYH3|M5SYH3_9PLAN ; ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_05689 PE=4 SV=1 ; EVALUE=1e-51 ; Q/S_length_ratio=0.919" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|X0YX27|X0YX27_9ZZZZ ; ALN/Q_length_ratio=0.912 ; DESCRIPTION=Marine sediment metagenome DNA, contig: S01H1_S40208 (Fragment) OS=marine sediment metagenome GN=S01H1_81281 PE=4 SV=1 ; EVALUE=3e-43 ; Q/S_length_ratio=1.019" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|X1IJ07|X1IJ07_9ZZZZ ; ALN/Q_length_ratio=0.874 ; DESCRIPTION=Marine sediment metagenome DNA, contig: S03H2_S18219 OS=marine sediment metagenome GN=S03H2_54365 PE=4 SV=1 ; EVALUE=6e-40 ; Q/S_length_ratio=1.059" /note="Pfam_scan:hit_1 (30..98); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71; EVALUE:1.3e-17; BITSCORE: 63.1" /note="Pfam_scan:hit_2 (139..192); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:53; HMM_Length:54; EVALUE:9.1e-16; BITSCORE: 57.0" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MLDPIRHPPD TDEQLLTRLR AGERDVFGTL VRRYERELFG YLRRYLGDDD LADDVFQNTF 61 VQVYLKIQQY EPGRPVRPWL YAIATNQAID ALRRRNRRAD QRADAVTSSD EDGQNRPLFE 121 LLPTPGDGPP ESADRAEQRE LVRAAVDRLP DLLRQVVVLA YFQGLKYRDV ADALDIPVGT 181 VKSRLHAALA RLTEDWNASQ ESGTGTQEAV QIPNV //