LOCUS VTR98515.1 167 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0328 PE=4 SV=1: Sigma70_r2 protein.
ACCESSION LR593886-6766
PROTEIN_ID VTR98515.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_02490"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D7Z3|L0D7Z3_SINAD ;
ALN/Q_length_ratio=0.539 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0328 PE=4 SV=1 ; EVALUE=3e-25 ;
Q/S_length_ratio=0.852"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|K6X9D0|K6X9D0_9MICO ;
ALN/Q_length_ratio=0.653 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Kineosphaera limosa NBRC 100340
GN=sigT PE=4 SV=1 ; EVALUE=4e-18 ; Q/S_length_ratio=0.884"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|Q67KY4|Q67KY4_SYMTH ;
ALN/Q_length_ratio=0.581 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=STH2677 PE=4 SV=1 ; EVALUE=3e-17
; Q/S_length_ratio=0.843"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A5D0C6|A5D0C6_PELTS ;
ALN/Q_length_ratio=0.533 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24 homolog
OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM
10971 / SI) GN=RpoE PE=4 SV=1 ; EVALUE=8e-17 ;
Q/S_length_ratio=0.819"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|B4CW59|B4CW59_9BACT ;
ALN/Q_length_ratio=0.593 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chthoniobacter flavus
Ellin428 GN=CfE428DRAFT_0896 PE=4 SV=1 ; EVALUE=9e-17 ;
Q/S_length_ratio=0.784"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|H0B672|H0B672_9ACTO ;
ALN/Q_length_ratio=0.766 ; DESCRIPTION=RNA polymerase
sigma factor SigM OS=Streptomyces sp. W007 GN=SPW_0864
PE=4 SV=1 ; EVALUE=2e-16 ; Q/S_length_ratio=0.702"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D2BEF5|D2BEF5_STRRD ;
ALN/Q_length_ratio=0.790 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Streptosporangium
roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI
9100) GN=Sros_9374 PE=4 SV=1 ; EVALUE=5e-16 ;
Q/S_length_ratio=0.831"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|I0HYH0|I0HYH0_CALAS ;
ALN/Q_length_ratio=0.533 ; DESCRIPTION=Putative RNA
polymerase ECF-type sigma factor OS=Caldilinea aerophila
(strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1)
GN=CLDAP_00180 PE=4 SV=1 ; EVALUE=9e-16 ;
Q/S_length_ratio=0.807"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|F8JSG8|F8JSG8_STREN ;
ALN/Q_length_ratio=0.838 ; DESCRIPTION=RNA polymerase
sigma factor SigM OS=Streptomyces cattleya (strain ATCC
35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)
GN=SCAT_3132 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=0.684"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|B1VPD7|B1VPD7_STRGG ;
ALN/Q_length_ratio=0.766 ; DESCRIPTION=Putative RNA
polymerase ECF-subfamily sigma factor OS=Streptomyces
griseus subsp. griseus (strain JCM 4626 / NBRC 13350)
GN=SGR_3687 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=0.702"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|G0PR59|G0PR59_STRGR ;
ALN/Q_length_ratio=0.766 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Streptomyces griseus
XylebKG-1 GN=SACT1_3984 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=0.702"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A087KBH6|A0A087KBH6_9ACTO ;
ALN/Q_length_ratio=0.766 ; DESCRIPTION=RNA polymerase
sigma factor SigM OS=Streptomyces sp. JS01 GN=IX27_01410
PE=4 SV=1 ; EVALUE=1e-15 ; Q/S_length_ratio=0.699"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F5L8R1|F5L8R1_9BACI ;
ALN/Q_length_ratio=0.605 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Caldalkalibacillus
thermarum TA2.A1 GN=CathTA2_2216 PE=4 SV=1 ; EVALUE=2e-15
; Q/S_length_ratio=0.888"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|E6S7E5|E6S7E5_INTC7 ;
ALN/Q_length_ratio=0.683 ; DESCRIPTION=RNA polymerase,
sigma subunit, ECF family OS=Intrasporangium calvum
(strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7
KIP) GN=Intca_3635 PE=4 SV=1 ; EVALUE=4e-15 ;
Q/S_length_ratio=0.852"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|X0X0E5|X0X0E5_9ZZZZ ;
ALN/Q_length_ratio=0.479 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_S33681 (Fragment) OS=marine
sediment metagenome GN=S01H1_72621 PE=4 SV=1 ;
EVALUE=8e-15 ; Q/S_length_ratio=0.861"
/note="Pfam_scan:hit_1 (45..115);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:6e-18; BITSCORE: 64.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MCVANRPLCR GPVTLPTHSV PVTAVPEAVL LERFAAGDEA TLGDLFRRYR MVAYRVAYRL
61 LGHEADALDA VQDGFVNALR NLDQFRGQSS FKTWLLRVVS NAAFDLGRRR KRNSRVSNEH
121 IDHPLDQLRA SELPADVRSA HRRGALVPGD HRRPQHLDRN RNDTESF
//