LOCUS VTR98515.1 167 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0328 PE=4 SV=1: Sigma70_r2 protein. ACCESSION LR593886-6766 PROTEIN_ID VTR98515.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_02490" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|L0D7Z3|L0D7Z3_SINAD ; ALN/Q_length_ratio=0.539 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0328 PE=4 SV=1 ; EVALUE=3e-25 ; Q/S_length_ratio=0.852" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|K6X9D0|K6X9D0_9MICO ; ALN/Q_length_ratio=0.653 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Kineosphaera limosa NBRC 100340 GN=sigT PE=4 SV=1 ; EVALUE=4e-18 ; Q/S_length_ratio=0.884" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|Q67KY4|Q67KY4_SYMTH ; ALN/Q_length_ratio=0.581 ; DESCRIPTION=RNA polymerase ECF-type sigma factor OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=STH2677 PE=4 SV=1 ; EVALUE=3e-17 ; Q/S_length_ratio=0.843" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|A5D0C6|A5D0C6_PELTS ; ALN/Q_length_ratio=0.533 ; DESCRIPTION=DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=RpoE PE=4 SV=1 ; EVALUE=8e-17 ; Q/S_length_ratio=0.819" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|B4CW59|B4CW59_9BACT ; ALN/Q_length_ratio=0.593 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_0896 PE=4 SV=1 ; EVALUE=9e-17 ; Q/S_length_ratio=0.784" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|H0B672|H0B672_9ACTO ; ALN/Q_length_ratio=0.766 ; DESCRIPTION=RNA polymerase sigma factor SigM OS=Streptomyces sp. W007 GN=SPW_0864 PE=4 SV=1 ; EVALUE=2e-16 ; Q/S_length_ratio=0.702" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|D2BEF5|D2BEF5_STRRD ; ALN/Q_length_ratio=0.790 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) GN=Sros_9374 PE=4 SV=1 ; EVALUE=5e-16 ; Q/S_length_ratio=0.831" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|I0HYH0|I0HYH0_CALAS ; ALN/Q_length_ratio=0.533 ; DESCRIPTION=Putative RNA polymerase ECF-type sigma factor OS=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) GN=CLDAP_00180 PE=4 SV=1 ; EVALUE=9e-16 ; Q/S_length_ratio=0.807" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|F8JSG8|F8JSG8_STREN ; ALN/Q_length_ratio=0.838 ; DESCRIPTION=RNA polymerase sigma factor SigM OS=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) GN=SCAT_3132 PE=4 SV=1 ; EVALUE=1e-15 ; Q/S_length_ratio=0.684" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|B1VPD7|B1VPD7_STRGG ; ALN/Q_length_ratio=0.766 ; DESCRIPTION=Putative RNA polymerase ECF-subfamily sigma factor OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=SGR_3687 PE=4 SV=1 ; EVALUE=1e-15 ; Q/S_length_ratio=0.702" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|G0PR59|G0PR59_STRGR ; ALN/Q_length_ratio=0.766 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Streptomyces griseus XylebKG-1 GN=SACT1_3984 PE=4 SV=1 ; EVALUE=1e-15 ; Q/S_length_ratio=0.702" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|A0A087KBH6|A0A087KBH6_9ACTO ; ALN/Q_length_ratio=0.766 ; DESCRIPTION=RNA polymerase sigma factor SigM OS=Streptomyces sp. JS01 GN=IX27_01410 PE=4 SV=1 ; EVALUE=1e-15 ; Q/S_length_ratio=0.699" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|F5L8R1|F5L8R1_9BACI ; ALN/Q_length_ratio=0.605 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Caldalkalibacillus thermarum TA2.A1 GN=CathTA2_2216 PE=4 SV=1 ; EVALUE=2e-15 ; Q/S_length_ratio=0.888" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|E6S7E5|E6S7E5_INTC7 ; ALN/Q_length_ratio=0.683 ; DESCRIPTION=RNA polymerase, sigma subunit, ECF family OS=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) GN=Intca_3635 PE=4 SV=1 ; EVALUE=4e-15 ; Q/S_length_ratio=0.852" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|X0X0E5|X0X0E5_9ZZZZ ; ALN/Q_length_ratio=0.479 ; DESCRIPTION=Marine sediment metagenome DNA, contig: S01H1_S33681 (Fragment) OS=marine sediment metagenome GN=S01H1_72621 PE=4 SV=1 ; EVALUE=8e-15 ; Q/S_length_ratio=0.861" /note="Pfam_scan:hit_1 (45..115); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71; EVALUE:6e-18; BITSCORE: 64.2" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MCVANRPLCR GPVTLPTHSV PVTAVPEAVL LERFAAGDEA TLGDLFRRYR MVAYRVAYRL 61 LGHEADALDA VQDGFVNALR NLDQFRGQSS FKTWLLRVVS NAAFDLGRRR KRNSRVSNEH 121 IDHPLDQLRA SELPADVRSA HRRGALVPGD HRRPQHLDRN RNDTESF //