LOCUS VTR98428.1 397 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana Xylose isomerase domain-containing
protein TIM barrel OS=Rhodothermus marinus SG0.5JP17-172
GN=Rhom172_1705 PE=4 SV=1: AP_endonuc_2: AP_endonuc_2_N
protein.
ACCESSION LR593886-6737
PROTEIN_ID VTR98428.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_02780"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|G2SFA0|G2SFA0_RHOMR ;
ALN/Q_length_ratio=0.801 ; DESCRIPTION=Xylose isomerase
domain-containing protein TIM barrel OS=Rhodothermus
marinus SG0.5JP17-172 GN=Rhom172_1705 PE=4 SV=1 ;
EVALUE=1e-34 ; Q/S_length_ratio=1.171"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D0MJF9|D0MJF9_RHOM4 ;
ALN/Q_length_ratio=0.801 ; DESCRIPTION=Xylose isomerase
domain protein TIM barrel OS=Rhodothermus marinus (strain
ATCC 43812 / DSM 4252 / R-10) GN=Rmar_1733 PE=4 SV=1 ;
EVALUE=2e-34 ; Q/S_length_ratio=1.171"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5RBT6|M5RBT6_9PLAN ;
ALN/Q_length_ratio=0.824 ; DESCRIPTION=Sugar phosphate
isomerase/epimerase OS=Rhodopirellula maiorica SM1
GN=RMSM_06122 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=1.199"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|J0KTQ8|J0KTQ8_9BURK ;
ALN/Q_length_ratio=0.814 ; DESCRIPTION=Sugar phosphate
isomerase/epimerase OS=Acidovorax sp. CF316 GN=PMI14_00603
PE=4 SV=1 ; EVALUE=2e-34 ; Q/S_length_ratio=1.178"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F4LWL0|F4LWL0_TEPAE ;
ALN/Q_length_ratio=0.814 ; DESCRIPTION=Xylose isomerase
domain-containing protein TIM barrel OS=Tepidanaerobacter
acetatoxydans (strain DSM 21804 / JCM 16047 / Re1)
GN=TepiRe1_0785 PE=4 SV=1 ; EVALUE=5e-34 ;
Q/S_length_ratio=1.207"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|G8QRQ3|G8QRQ3_SPHPG ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=Sugar phosphate
isomerase/epimerase OS=Sphaerochaeta pleomorpha (strain
ATCC BAA-1885 / DSM 22778 / Grapes) GN=SpiGrapes_1012 PE=4
SV=1 ; EVALUE=9e-33 ; Q/S_length_ratio=1.203"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|U1MUH1|U1MUH1_9MICO ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=AP endonuclease
OS=Agrococcus pavilionensis RW1 GN=L332_14305 PE=4 SV=1 ;
EVALUE=2e-32 ; Q/S_length_ratio=1.192"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|N9ZC21|N9ZC21_9FIRM ;
ALN/Q_length_ratio=0.814 ; DESCRIPTION=Xylose isomerase
OS=[Clostridium] bolteae 90B8 GN=HMPREF1097_03092 PE=4
SV=1 ; EVALUE=2e-32 ; Q/S_length_ratio=1.207"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|F2ATI6|F2ATI6_RHOBT ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=Xylose isomerase
domain-containing protein OS=Rhodopirellula baltica WH47
GN=RBWH47_05616 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=1.189"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|I2F721|I2F721_9THEM ;
ALN/Q_length_ratio=0.816 ; DESCRIPTION=Sugar phosphate
isomerase/epimerase OS=Mesotoga prima MesG1.Ag.4.2
GN=Theba_2090 PE=4 SV=1 ; EVALUE=3e-32 ;
Q/S_length_ratio=1.203"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7US81|Q7US81_RHOBA ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=Putative
uncharacterized protein OS=Rhodopirellula baltica (strain
SH1) GN=RB4654 PE=4 SV=1 ; EVALUE=3e-32 ;
Q/S_length_ratio=1.189"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|K5CAM7|K5CAM7_RHOBT ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=Xylose isomerase
domain-containing protein OS=Rhodopirellula baltica SH28
GN=RBSH_04336 PE=4 SV=1 ; EVALUE=3e-32 ;
Q/S_length_ratio=1.189"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5BDZ7|M5BDZ7_9MICO ;
ALN/Q_length_ratio=0.788 ; DESCRIPTION=Uncharacterized
protein OS=Clavibacter michiganensis subsp. nebraskensis
NCPPB 2581 GN=CMN_02734 PE=4 SV=1 ; EVALUE=6e-32 ;
Q/S_length_ratio=1.125"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5E4G4|M5E4G4_9FIRM ;
ALN/Q_length_ratio=0.821 ; DESCRIPTION=Inosose isomerase
OS=Halanaerobium saccharolyticum subsp. saccharolyticum
DSM 6643 GN=HSACCH_02372 PE=4 SV=1 ; EVALUE=7e-32 ;
Q/S_length_ratio=1.207"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L7CRI6|L7CRI6_RHOBT ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=Xylose isomerase
domain-containing protein OS=Rhodopirellula baltica SWK14
GN=RBSWK_00406 PE=4 SV=1 ; EVALUE=1e-31 ;
Q/S_length_ratio=1.189"
/note="Pfam_scan:hit_1 (41..333);
Pfam:PF01261.19:AP_endonuc_2;
Pfam_type:Domain;HMM_aln_Length:128; HMM_Length:213;
EVALUE:2.1e-12; BITSCORE: 46.7"
/note="Pfam_scan:hit_2 (341..394);
Pfam:PF07582.7:AP_endonuc_2_N;
Pfam_type:Family;HMM_aln_Length:52; HMM_Length:55;
EVALUE:1.4e-11; BITSCORE: 43.7"
BEGIN
1 MGFAQTVDSE GKPVHRPGKG SYHQIGLVRG QFGGVPEGEW IKFIAGAGFD GWEEASWELD
61 LRRCDTDAGA AEYAKERVAL AKQHGMEIFT VATHLQGQVL GDEPSAKTLN FCSGKGEAKA
121 AYKAWRAAGN NPPRTDPFFV PAEVGKLMHA EAKKDLLAAT RYAGHLSKLQ NRKVALPGFV
181 GSPAHCWSHW FLFPPLPSSM EGYDIPDVWK VSLELIAERF GDVWKLCKEY GVTFDLECHP
241 SERAMGDLES AGDYISFMNN AGFEGTVGFN LDGSHMEWQN VSVIQFIREY AKYIHCAHVK
301 GVQVEREHCR GGLLGGHRWM GHWTNGWKFV TPGTARDANS LEEIFIELNR VGFEGAVSIE
361 WEDNDADKFS GAKAALANCR KADLPPSWGK HDDALKG
//