LOCUS VTR98371.1 172 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana histone family protein dna-binding
protein : Histone family protein DNA-binding protein OS=
Planctomyces limnophilus (strain ATCC 43296 / DSM 3776
/ IFAM 1008 / 290) GN=Plim_1271 PE=3 SV=1: Bac_DNA_binding
protein.
ACCESSION LR593886-6718
PROTEIN_ID VTR98371.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_02970"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5SUQ3|D5SUQ3_PLAL2 ;
ALN/Q_length_ratio=0.930 ; DESCRIPTION=Histone family
protein DNA-binding protein OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_1271 PE=3 SV=1 ; EVALUE=4e-35 ;
Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGH7|L0DGH7_SINAD ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=Bacterial nucleoid
DNA-binding protein OS=Singulisphaera acidiphila (strain
ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3716 PE=3 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=1.203"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DGZ5|L0DGZ5_SINAD ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=Bacterial nucleoid
DNA-binding protein OS=Singulisphaera acidiphila (strain
ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4460 PE=3 SV=1 ; EVALUE=6e-32 ;
Q/S_length_ratio=1.376"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D2QWH5|D2QWH5_PIRSD ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=Histone family
protein DNA-binding protein OS=Pirellula staleyi (strain
ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_3114 PE=3 SV=1
; EVALUE=2e-31 ; Q/S_length_ratio=0.956"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A6CAS4|A6CAS4_9PLAN ;
ALN/Q_length_ratio=0.523 ; DESCRIPTION=Probable
DNA-binding protein HU OS=Planctomyces maris DSM 8797
GN=PM8797T_23841 PE=3 SV=1 ; EVALUE=3e-31 ;
Q/S_length_ratio=1.162"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A4A2Z0|A4A2Z0_9PLAN ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=Probable
DNA-binding protein HU OS=Blastopirellula marina DSM 3645
GN=DSM3645_01736 PE=3 SV=1 ; EVALUE=5e-31 ;
Q/S_length_ratio=1.082"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|E8R2S7|E8R2S7_ISOPI ;
ALN/Q_length_ratio=0.523 ; DESCRIPTION=Histone family
protein DNA-binding protein OS=Isosphaera pallida (strain
ATCC 43644 / DSM 9630 / IS1B) GN=Isop_3009 PE=3 SV=1 ;
EVALUE=1e-30 ; Q/S_length_ratio=1.365"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|F0SMC9|F0SMC9_PLABD ;
ALN/Q_length_ratio=0.779 ; DESCRIPTION=Histone family
protein DNA-binding protein OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=Plabr_4537 PE=3 SV=1 ; EVALUE=3e-30 ;
Q/S_length_ratio=1.265"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|X0T0W4|X0T0W4_9ZZZZ ;
ALN/Q_length_ratio=0.483 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L02847 OS=marine sediment
metagenome GN=S01H1_09142 PE=4 SV=1 ; EVALUE=7e-28 ;
Q/S_length_ratio=1.313"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|K5DN58|K5DN58_RHOBT ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=DNA-binding protein
HU OS=Rhodopirellula baltica SH28 GN=RBSH_00654 PE=3 SV=1
; EVALUE=1e-27 ; Q/S_length_ratio=1.237"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M2AM62|M2AM62_9PLAN ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=DNA-binding protein
HU OS=Rhodopirellula europaea 6C GN=RE6C_01034 PE=3 SV=1 ;
EVALUE=1e-27 ; Q/S_length_ratio=1.237"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5SAU1|M5SAU1_9PLAN ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=DNA-binding protein
HU OS=Rhodopirellula europaea SH398 GN=RESH_06176 PE=3
SV=1 ; EVALUE=1e-27 ; Q/S_length_ratio=1.237"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7UUH9|Q7UUH9_RHOBA ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=Probable
DNA-binding protein HU OS=Rhodopirellula baltica (strain
SH1) GN=hup PE=3 SV=1 ; EVALUE=1e-27 ;
Q/S_length_ratio=1.237"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F2AYW4|F2AYW4_RHOBT ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=DNA-binding protein
HU OS=Rhodopirellula baltica WH47 GN=RBWH47_04700 PE=3
SV=1 ; EVALUE=1e-27 ; Q/S_length_ratio=1.237"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L7CCU4|L7CCU4_RHOBT ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=Histone-like
bacterial DNA-binding protein OS=Rhodopirellula baltica
SWK14 GN=RBSWK_04590 PE=3 SV=1 ; EVALUE=1e-27 ;
Q/S_length_ratio=1.237"
/note="Pfam_scan:hit_1 (1..99);
Pfam:PF00216.16:Bac_DNA_binding;
Pfam_type:Domain;HMM_aln_Length:89; HMM_Length:90;
EVALUE:3.9e-25; BITSCORE: 87.6"
/note="GO_domain:GO:0003677"
BEGIN
1 MTKKEIVKTI CDRANHEKLI PKHSLTQLAT KEIVQWTFEA IIATLVQEGR IELRNFGVFE
61 VKQRRPRKAR NPRTGDPVNV EAKNVVTFQP GKMMEEQVKK STKIAEVKKK KPRKSKADKA
121 ARNAEPKTAP APIAPEPSAN GNGTVLTETA SVPAVVSAAV KSVAEPVTSD AT
//