LOCUS VTR98081.1 550 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma70 : RNA polymerase
sigma factor SigA OS=Singulisphaera acidiphila (strain
ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=sigA
PE=3 SV=1: Sigma70_r1_1: Sigma70_r1_2: Sigma70_r2: Sigma70_r3:
Sigma70_r4 protein.
ACCESSION LR593886-6620
PROTEIN_ID VTR98081.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_03950"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D5SND9|D5SND9_PLAL2 ;
ALN/Q_length_ratio=0.982 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=sigA PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|E8R2V4|E8R2V4_ISOPI ;
ALN/Q_length_ratio=1.062 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Isosphaera pallida (strain ATCC 43644
/ DSM 9630 / IS1B) GN=sigA PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.929"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M2AWI6|M2AWI6_9PLAN ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula europaea 6C GN=sigA
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SFA0|F0SFA0_PLABD ;
ALN/Q_length_ratio=1.002 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Planctomyces brasiliensis (strain
ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM
1448) GN=sigA PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.932"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D2R6R0|D2R6R0_PIRSD ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Pirellula staleyi (strain ATCC 27377
/ DSM 6068 / ICPB 4128) GN=sigA PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.011"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q1PW65|Q1PW65_9BACT ;
ALN/Q_length_ratio=0.982 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Candidatus Kuenenia stuttgartiensis
GN=rpoD PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.998"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|I3IGM3|I3IGM3_9PLAN ;
ALN/Q_length_ratio=0.982 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=planctomycete KSU-1 GN=sigA PE=3 SV=1
; EVALUE=0.0 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5SSX9|M5SSX9_9PLAN ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula europaea SH398 GN=sigA
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L7CCA8|L7CCA8_RHOBT ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula baltica SWK14 GN=sigA
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|Q7UQG1|Q7UQG1_RHOBA ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula baltica (strain SH1)
GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A6C4Z7|A6C4Z7_9PLAN ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Planctomyces maris DSM 8797 GN=sigA
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.980"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F2AVR1|F2AVR1_RHOBT ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula baltica WH47 GN=sigA
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|K5DET9|K5DET9_RHOBT ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Rhodopirellula baltica SH28 GN=sigA
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A3ZZZ4|A3ZZZ4_9PLAN ;
ALN/Q_length_ratio=0.998 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Blastopirellula marina DSM 3645
GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DAT7|L0DAT7_SINAD ;
ALN/Q_length_ratio=1.002 ; DESCRIPTION=RNA polymerase
sigma factor SigA OS=Singulisphaera acidiphila (strain
ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=sigA
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.989"
/note="Pfam_scan:hit_1 (1..85);
Pfam:PF03979.9:Sigma70_r1_1;
Pfam_type:Family;HMM_aln_Length:65; HMM_Length:82;
EVALUE:2.8e-13; BITSCORE: 49.5"
/note="Pfam_scan:hit_2 (92..128);
Pfam:PF00140.15:Sigma70_r1_2;
Pfam_type:Family;HMM_aln_Length:30; HMM_Length:37;
EVALUE:2.4e-09; BITSCORE: 36.7"
/note="Pfam_scan:hit_3 (312..381);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71;
EVALUE:6.3e-21; BITSCORE: 73.7"
/note="Pfam_scan:hit_4 (390..467);
Pfam:PF04539.11:Sigma70_r3;
Pfam_type:Family;HMM_aln_Length:76; HMM_Length:78;
EVALUE:3.4e-21; BITSCORE: 74.9"
/note="Pfam_scan:hit_5 (479..532);
Pfam:PF04545.11:Sigma70_r4;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:50;
EVALUE:4.4e-18; BITSCORE: 64.3"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MDWKNDEVLK ALIEKGKQSG TLTYDEVNTA LSADAEPERL TEITELLDQH GISLIDADED
61 AEDAPSAVVE ALISDPESSA FEDSDGDGRH IDDPVRMYLT QMGQIDLLDR RQEVSLAMKI
121 ELTRRRFRRK VLECDYAMRQ VVETLKRVHS GDLPFDRTIK VSQTENLEKD KILARMPHNL
181 RTLEPLMEGN VEDFQRLGDD RTPNTEKEEI RERLRLRRRK TVTLVEELSI RTQKVQPLMK
241 KLEQISQRMD ELEAEIETLK GNRTAKEERA NLEKELQDLM LITLEEPASL RKRVGIMKQR
301 FTEYEQAKRD LSGGNLRLVV SIAKKYRNRG LSFLDLIQEG NTGLMRAVDK YEHRRGFKFS
361 TYATWWIRQA ITRAIADQAR TIRIPVHMIE TMSKLRNVSK QLLQALGREP TIEETAKAAN
421 ISYEECKRVL KISRQPISLD RPVGESEDSY FGDFIEDNSV DSPVNAATNE MLKDKIEGVL
481 KTLTYREREI IKLRYGLGDG YTYTLEEVGR IFKVTRERVR QIEAKAVRKL QHPVRSRQLE
541 GFLDGLKNKT
//