LOCUS VTR98081.1 550 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase sigma70 : RNA polymerase sigma factor SigA OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=sigA PE=3 SV=1: Sigma70_r1_1: Sigma70_r1_2: Sigma70_r2: Sigma70_r3: Sigma70_r4 protein. ACCESSION LR593886-6620 PROTEIN_ID VTR98081.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_03950" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|D5SND9|D5SND9_PLAL2 ; ALN/Q_length_ratio=0.982 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.000" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|E8R2V4|E8R2V4_ISOPI ; ALN/Q_length_ratio=1.062 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.929" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|M2AWI6|M2AWI6_9PLAN ; ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula europaea 6C GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|F0SFA0|F0SFA0_PLABD ; ALN/Q_length_ratio=1.002 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.932" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|D2R6R0|D2R6R0_PIRSD ; ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.011" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|Q1PW65|Q1PW65_9BACT ; ALN/Q_length_ratio=0.982 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Candidatus Kuenenia stuttgartiensis GN=rpoD PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.998" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|I3IGM3|I3IGM3_9PLAN ; ALN/Q_length_ratio=0.982 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=planctomycete KSU-1 GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.000" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|M5SSX9|M5SSX9_9PLAN ; ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula europaea SH398 GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|L7CCA8|L7CCA8_RHOBT ; ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula baltica SWK14 GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|Q7UQG1|Q7UQG1_RHOBA ; ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula baltica (strain SH1) GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|A6C4Z7|A6C4Z7_9PLAN ; ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Planctomyces maris DSM 8797 GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.980" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|F2AVR1|F2AVR1_RHOBT ; ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula baltica WH47 GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|K5DET9|K5DET9_RHOBT ; ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Rhodopirellula baltica SH28 GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|A3ZZZ4|A3ZZZ4_9PLAN ; ALN/Q_length_ratio=0.998 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Blastopirellula marina DSM 3645 GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.970" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|L0DAT7|L0DAT7_SINAD ; ALN/Q_length_ratio=1.002 ; DESCRIPTION=RNA polymerase sigma factor SigA OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=sigA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.989" /note="Pfam_scan:hit_1 (1..85); Pfam:PF03979.9:Sigma70_r1_1; Pfam_type:Family;HMM_aln_Length:65; HMM_Length:82; EVALUE:2.8e-13; BITSCORE: 49.5" /note="Pfam_scan:hit_2 (92..128); Pfam:PF00140.15:Sigma70_r1_2; Pfam_type:Family;HMM_aln_Length:30; HMM_Length:37; EVALUE:2.4e-09; BITSCORE: 36.7" /note="Pfam_scan:hit_3 (312..381); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71; EVALUE:6.3e-21; BITSCORE: 73.7" /note="Pfam_scan:hit_4 (390..467); Pfam:PF04539.11:Sigma70_r3; Pfam_type:Family;HMM_aln_Length:76; HMM_Length:78; EVALUE:3.4e-21; BITSCORE: 74.9" /note="Pfam_scan:hit_5 (479..532); Pfam:PF04545.11:Sigma70_r4; Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:50; EVALUE:4.4e-18; BITSCORE: 64.3" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MDWKNDEVLK ALIEKGKQSG TLTYDEVNTA LSADAEPERL TEITELLDQH GISLIDADED 61 AEDAPSAVVE ALISDPESSA FEDSDGDGRH IDDPVRMYLT QMGQIDLLDR RQEVSLAMKI 121 ELTRRRFRRK VLECDYAMRQ VVETLKRVHS GDLPFDRTIK VSQTENLEKD KILARMPHNL 181 RTLEPLMEGN VEDFQRLGDD RTPNTEKEEI RERLRLRRRK TVTLVEELSI RTQKVQPLMK 241 KLEQISQRMD ELEAEIETLK GNRTAKEERA NLEKELQDLM LITLEEPASL RKRVGIMKQR 301 FTEYEQAKRD LSGGNLRLVV SIAKKYRNRG LSFLDLIQEG NTGLMRAVDK YEHRRGFKFS 361 TYATWWIRQA ITRAIADQAR TIRIPVHMIE TMSKLRNVSK QLLQALGREP TIEETAKAAN 421 ISYEECKRVL KISRQPISLD RPVGESEDSY FGDFIEDNSV DSPVNAATNE MLKDKIEGVL 481 KTLTYREREI IKLRYGLGDG YTYTLEEVGR IFKVTRERVR QIEAKAVRKL QHPVRSRQLE 541 GFLDGLKNKT //