LOCUS VTR98003.1 437 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana diaminopimelate decarboxylase : Diaminopimelate
decarboxylase OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=lysA PE=3 SV=1:
Orn_Arg_deC_N: Orn_DAP_Arg_deC protein.
ACCESSION LR593886-6581
PROTEIN_ID VTR98003.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_04340"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5SXN8|D5SXN8_PLAL2 ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=lysA PE=3 SV=1 ;
EVALUE=1e-172 ; Q/S_length_ratio=0.978"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|E8R4Y3|E8R4Y3_ISOPI ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Isosphaera pallida (strain ATCC 43644 /
DSM 9630 / IS1B) GN=lysA PE=3 SV=1 ; EVALUE=1e-168 ;
Q/S_length_ratio=0.926"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A6CE75|A6CE75_9PLAN ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Planctomyces maris DSM 8797 GN=lysA PE=3
SV=1 ; EVALUE=1e-167 ; Q/S_length_ratio=1.033"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0SQC0|F0SQC0_PLABD ;
ALN/Q_length_ratio=0.968 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Planctomyces brasiliensis (strain ATCC
49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=lysA PE=3 SV=1 ; EVALUE=1e-162 ;
Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|I3IQC9|I3IQC9_9PLAN ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=planctomycete KSU-1 GN=lysA PE=3 SV=1 ;
EVALUE=1e-145 ; Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|Q1Q5N0|Q1Q5N0_9BACT ;
ALN/Q_length_ratio=0.977 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Candidatus Kuenenia stuttgartiensis
GN=lysa PE=3 SV=1 ; EVALUE=1e-144 ;
Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|B5YL42|B5YL42_THEYD ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=lysA PE=3 SV=1 ;
EVALUE=1e-137 ; Q/S_length_ratio=1.045"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5PWX8|M5PWX8_DESAF ;
ALN/Q_length_ratio=0.950 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Desulfovibrio africanus PCS GN=lysA PE=3
SV=1 ; EVALUE=1e-137 ; Q/S_length_ratio=1.040"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|F3Z2K8|F3Z2K8_DESAF ;
ALN/Q_length_ratio=0.950 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Desulfovibrio africanus str. Walvis Bay
GN=lysA PE=3 SV=1 ; EVALUE=1e-136 ;
Q/S_length_ratio=1.040"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|B8DJI8|B8DJI8_DESVM ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Desulfovibrio vulgaris (strain Miyazaki F
/ DSM 19637) GN=lysA PE=3 SV=1 ; EVALUE=1e-133 ;
Q/S_length_ratio=1.050"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|T2GCA2|T2GCA2_DESGI ;
ALN/Q_length_ratio=0.952 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Desulfovibrio gigas DSM 1382 = ATCC 19364
GN=lysA PE=3 SV=1 ; EVALUE=1e-133 ;
Q/S_length_ratio=1.048"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|C6BUL1|C6BUL1_DESAD ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=lysA PE=3
SV=1 ; EVALUE=1e-130 ; Q/S_length_ratio=1.061"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|Q2LTA2|Q2LTA2_SYNAS ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Syntrophus aciditrophicus (strain SB)
GN=lysA PE=3 SV=1 ; EVALUE=1e-130 ;
Q/S_length_ratio=1.023"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|G2H3S5|G2H3S5_9DELT ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Desulfovibrio sp. A2 GN=lysA PE=3 SV=1 ;
EVALUE=1e-130 ; Q/S_length_ratio=1.050"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A068JMV8|A0A068JMV8_9DELT ;
ALN/Q_length_ratio=0.950 ; DESCRIPTION=Diaminopimelate
decarboxylase OS=Desulfonatronum thiodismutans GN=lysA
PE=3 SV=1 ; EVALUE=1e-128 ; Q/S_length_ratio=1.048"
/note="Pfam_scan:hit_1 (33..281);
Pfam:PF02784.11:Orn_Arg_deC_N;
Pfam_type:Domain;HMM_aln_Length:244; HMM_Length:251;
EVALUE:9.3e-51; BITSCORE: 172.4"
/note="Pfam_scan:hit_2 (246..411);
Pfam:PF00278.17:Orn_DAP_Arg_deC;
Pfam_type:Domain;HMM_aln_Length:114; HMM_Length:116;
EVALUE:3e-18; BITSCORE: 65.6"
/note="GO_domain:GO:0016829"
/note="GO_domain:GO:0006520"
/note="GO_domain:GO:0009058"
/note="Enzyme_Code:EC:4.1.1.20"
BEGIN
1 MDHFDYRDRT LYCEDVPVPE LAEKYGTPLY VYSQATLLDR LKEVQTAFTE VKPVICYSVK
61 ANGNLSIARL MGQNGAGFDV TSQGEFQRAL KAGPTGSKIV FAGVGKSDAE IEFALKNDVF
121 LFDVESEQEL HAIGAVAQKL GVKAPVALRV NPDLPPKTHV KTDTSVKGVK FGLDIETIVD
181 VAKGVVGHPG LAVVGLHMHL GSPILKAEPY RMGAEKGVAL IKQFRAQGHD IKFLNMGGGF
241 GINYRKDEAK PASAFAEVII PAVKESGCQL ILEPGRFIAG NAAILLSRVV FTKSTGGKHY
301 IIQDAAMNDL IRPTLYGSFH RIWPVTPSTE VPVRPDVNGD PDDPNPFRAM PNCFTQDVVG
361 PVCESGDYLA KDRPLPGVKR GDLLAVFSAG AYGMAMASNY NSRVRAAEVL VTGRTHRLIR
421 RRETFADLVA CEEDCLT
//