LOCUS VTR97049.1 661 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: WD40 protein.
ACCESSION LR593886-6100
PROTEIN_ID VTR97049.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_09150"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.410 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=1.077"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.366 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=7e-38 ;
Q/S_length_ratio=1.559"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.374 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=1e-37 ;
Q/S_length_ratio=1.327"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.418 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=1.499"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.284 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=1.156"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.408 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=9e-35 ;
Q/S_length_ratio=1.180"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.464 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=1.091"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.324 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=0.740"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.269 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=1.317"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.315 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=5e-33 ;
Q/S_length_ratio=1.371"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.325 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=5e-33 ;
Q/S_length_ratio=0.600"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=0.307 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=6e-33 ;
Q/S_length_ratio=0.675"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.290 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=0.539"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.304 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=4e-32 ;
Q/S_length_ratio=2.072"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.399 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=4e-31 ;
Q/S_length_ratio=0.913"
/note="Pfam_scan:hit_1 (39..112);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:63; HMM_Length:71;
EVALUE:1e-08; BITSCORE: 34.6"
/note="Pfam_scan:hit_2 (133..186);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:7.5e-12; BITSCORE: 44.5"
/note="Pfam_scan:hit_3 (503..540); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:33; HMM_Length:39;
EVALUE:0.013; BITSCORE: 15.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTIADTLRRL GCSAPDPRSD GELLHGFASA RDEGAFTELL RRFGPTVYGV CRRVLGNVPD
61 ADDAFQAVFL VLARRAPELR TPAGIGNWLY GVAVRTATKA RIMNAKRRAR QRSDRTSRSV
121 SYPPPVAPDP DTRAAIDAEL AALPDRYRAA LVACDLNGRT RREAARELGW PEGTVAARLA
181 HARRLLAARL TRRGVTLTAG ALAAVPVPAS VAAETVAAVR ALHATGTAAL ISPAAQRLSD
241 EATRSVTTIP ERWLVWCGLV LALVAGGAVL RATPDHDPLL PAPQFVAAPV PRAAEVEWRE
301 AQPIELSDGG RVTSVAFAPG GKTFAVCRDS GDIDFFDPVT RKHQQRMAVR HDPTVNANTE
361 VGTSTVLAFR PTPHSALGDV FAVTHKNGVI FGTTTIGLLA DNAAAVTGVP GNWALKGLDP
421 HALVWVPGAD GSACVAVTNG AVTTAAPKAA AGMEPQFPGE DKFRHKPTPL APLPGSRLLT
481 TFKAVEDTGT SLQLHIVPLT GPNKRVKLTG HRARPTCAAA APDGKTLVTG DERGEVIVWD
541 GETGEATSRV VLGAGLVQLA LAPDERTLAA VCVRPLKVAG GERTELELYL LDARSLRAKP
601 KPCWTTGDKP LPGRLEGTAS LAFSSNGKTL LVAVADPFAR TTPAELPKSM GVRVWERVPK
661 K
//