LOCUS VTR96847.1 426 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma ecf subfamily protein : RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4095 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-5999
PROTEIN_ID VTR96847.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_10160"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DG08|L0DG08_SINAD ;
ALN/Q_length_ratio=0.977 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4095 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.984"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|I2GDS0|I2GDS0_9BACT ;
ALN/Q_length_ratio=0.969 ; DESCRIPTION=RNA polymerase
sigma factor OS=Fibrisoma limi BUZ 3 GN=BN8_01016 PE=3
SV=1 ; EVALUE=1e-114 ; Q/S_length_ratio=1.012"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|B9XQD3|B9XQD3_PEDPL ;
ALN/Q_length_ratio=0.977 ; DESCRIPTION=Putative RNA
polymerase, sigma-24 subunit, ECF subfamily OS=Pedosphaera
parvula (strain Ellin514) GN=Cflav_PD1132 PE=4 SV=1 ;
EVALUE=1e-112 ; Q/S_length_ratio=0.968"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F4KR94|F4KR94_HALH1 ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=Putative RNA
polymerase, sigma-24 subunit, ECF subfamily
OS=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM
1100 / LMG 10767 / O) GN=Halhy_6465 PE=4 SV=1 ;
EVALUE=1e-110 ; Q/S_length_ratio=1.036"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|B4CZK9|B4CZK9_9BACT ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=Putative RNA
polymerase, sigma-24 subunit, ECF subfamily
OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_2097 PE=4
SV=1 ; EVALUE=1e-106 ; Q/S_length_ratio=1.002"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A023BT62|A0A023BT62_9FLAO ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=Uncharacterized
protein OS=Aquimarina sp. 22II-S11-z7 GN=ATO12_19530 PE=4
SV=1 ; EVALUE=1e-103 ; Q/S_length_ratio=1.002"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A098XYN3|A0A098XYN3_9CYAN ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Tolypothrix bouteillei VB521301
GN=DA73_35030 PE=4 SV=1 ; EVALUE=1e-101 ;
Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|B1KFA5|B1KFA5_SHEWM ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=Putative RNA
polymerase, sigma 70 family subunit OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=Swoo_2367 PE=4 SV=1 ;
EVALUE=1e-99 ; Q/S_length_ratio=1.087"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|G8TP93|G8TP93_NIAKG ;
ALN/Q_length_ratio=0.958 ; DESCRIPTION=Putative RNA
polymerase, sigma-24 subunit, ECF subfamily OS=Niastella
koreensis (strain DSM 17620 / KACC 11465 / GR20-10)
GN=Niako_0301 PE=4 SV=1 ; EVALUE=7e-99 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|I6B1K4|I6B1K4_9BACT ;
ALN/Q_length_ratio=0.977 ; DESCRIPTION=RNA polymerase
sigma factor OS=Opitutaceae bacterium TAV1
GN=OpiT1DRAFT_05714 PE=3 SV=1 ; EVALUE=6e-98 ;
Q/S_length_ratio=0.938"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|W0JAR2|W0JAR2_9BACT ;
ALN/Q_length_ratio=0.979 ; DESCRIPTION=RNA polymerase
sigma factor OS=Opitutaceae bacterium TAV5 GN=OPIT5_30740
PE=3 SV=1 ; EVALUE=1e-97 ; Q/S_length_ratio=0.936"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|R9PH27|R9PH27_AGAAL ;
ALN/Q_length_ratio=0.890 ; DESCRIPTION=Putative sigma
factor OS=Agarivorans albus MKT 106 GN=AALB_0638 PE=4 SV=1
; EVALUE=2e-97 ; Q/S_length_ratio=1.024"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A3YHN4|A3YHN4_9GAMM ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=Putative sigma
factor OS=Marinomonas sp. MED121 GN=MED121_03090 PE=4 SV=1
; EVALUE=2e-97 ; Q/S_length_ratio=0.993"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|F8ECF8|F8ECF8_RUNSL ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=Putative RNA
polymerase, sigma-24 subunit, ECF subfamily OS=Runella
slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /
NCIMB 11436 / LSU 4) GN=Runsl_1333 PE=4 SV=1 ;
EVALUE=4e-97 ; Q/S_length_ratio=1.024"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K6Y223|K6Y223_9ALTE ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
sigma 70 family subunit OS=Glaciecola arctica BSs20135
GN=GARC_1005 PE=4 SV=1 ; EVALUE=7e-97 ;
Q/S_length_ratio=1.005"
/note="Pfam_scan:hit_1 (12..81);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:63; HMM_Length:71;
EVALUE:1.9e-09; BITSCORE: 36.9"
/note="Pfam_scan:hit_2 (113..166);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:2e-09; BITSCORE: 36.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSEPRALVEH FFRHEFGRLV AVLTRSLGVR RLDLVEDVVQ AALVQALESW ARRGVPEDPA
61 GWLYRTARNL AVDALRREQT YARVLPHLSD GAEQVAAPPE VHFADEIGDE PLRLLFVSCH
121 EEVPAESRVA FALRTLCGFS SAEIARGLLT TEANVQKRIE RARDRLRDLD IDFEAPATPQ
181 LRARLDAVLS VIYLLFSQGC HATHADVPIR RDLCDEARRL AQMLAAHPVG DVPVVHALLA
241 LMCFHAARFD ARVALDGGIV LFEQQDRSTW NWGDVREGME WLARAAAGDE LTRYHVEAGI
301 AWEHCRASSV ADTDWHRIAA GYDVLDRIAP SPIHALNRAV AEVYLRGPQA GLDRLAAVAP
361 EDVPARYPGW YAVIGELHSR LGQHPAAERA WLEALRLTSA SADQEFLRRR LADCRRALGL
421 ATIARS
//