LOCUS VTR96831.1 539 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana transcriptional fis family : Sigma-
54 factor interaction domain-containing protein OS=Planctomyces
limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008
/ 290) GN=Plim_2667 PE=4 SV=1: GAF_2: Sigma54_activat:
HTH_8 protein.
ACCESSION LR593886-5991
PROTEIN_ID VTR96831.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_10240"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5TEI6|M5TEI6_9PLAN ;
ALN/Q_length_ratio=0.978 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
sp. SWK7 GN=RRSWK_03549 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.964"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A3ZSH2|A3ZSH2_9PLAN ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=Hydrogenase-4
transcriptional activator OS=Blastopirellula marina DSM
3645 GN=DSM3645_14840 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5UK12|M5UK12_9PLAN ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
sallentina SM41 GN=RSSM_02203 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5SAH5|M5SAH5_9PLAN ;
ALN/Q_length_ratio=0.978 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
europaea SH398 GN=RESH_06273 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.007"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L7C5X6|L7C5X6_RHOBT ;
ALN/Q_length_ratio=0.978 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
baltica SWK14 GN=RBSWK_06445 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|B4D478|B4D478_9BACT ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Chthoniobacter
flavus Ellin428 GN=CfE428DRAFT_3716 PE=4 SV=1 ; EVALUE=0.0
; Q/S_length_ratio=1.027"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q7ULD5|Q7ULD5_RHOBA ;
ALN/Q_length_ratio=0.978 ; DESCRIPTION=Hydrogenase-4
transcriptional activator OS=Rhodopirellula baltica
(strain SH1) GN=hyfR PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|B9XF66|B9XF66_PEDPL ;
ALN/Q_length_ratio=0.968 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Pedosphaera
parvula (strain Ellin514) GN=Cflav_PD4242 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.021"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|F2AQI5|F2AQI5_RHOBT ;
ALN/Q_length_ratio=0.976 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
baltica WH47 GN=RBWH47_05104 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|K5DDT7|K5DDT7_RHOBT ;
ALN/Q_length_ratio=0.976 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
baltica SH28 GN=RBSH_04055 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5RPG9|M5RPG9_9PLAN ;
ALN/Q_length_ratio=0.991 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
maiorica SM1 GN=RMSM_07228 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.998"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L7VVK2|L7VVK2_9BACT ;
ALN/Q_length_ratio=0.987 ; DESCRIPTION=Hydrogenase-4
transcriptional activator OS=uncultured bacterium
A1Q1_fos_1231 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.989"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D2R1I6|D2R1I6_PIRSD ;
ALN/Q_length_ratio=0.976 ; DESCRIPTION=Sigma 54
interacting domain protein OS=Pirellula staleyi (strain
ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_0276 PE=4 SV=1
; EVALUE=0.0 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M2AA55|M2AA55_9PLAN ;
ALN/Q_length_ratio=0.978 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
europaea 6C GN=RE6C_06025 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.007"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5SQM8|D5SQM8_PLAL2 ;
ALN/Q_length_ratio=1.002 ; DESCRIPTION=Sigma-54 factor
interaction domain-containing protein OS=Planctomyces
limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 /
290) GN=Plim_2667 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.978"
/note="Pfam_scan:hit_1 (23..188); Pfam:PF13185.1:GAF_2;
Pfam_type:Domain;HMM_aln_Length:144; HMM_Length:148;
EVALUE:2.3e-11; BITSCORE: 44.4"
/note="Pfam_scan:hit_2 (223..390);
Pfam:PF00158.21:Sigma54_activat;
Pfam_type:Domain;HMM_aln_Length:165; HMM_Length:168;
EVALUE:1.2e-68; BITSCORE: 229.8"
/note="Pfam_scan:hit_3 (491..535); Pfam:PF02954.14:HTH_8;
Pfam_type:Domain;HMM_aln_Length:38; HMM_Length:42;
EVALUE:0.00012; BITSCORE: 21.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0008134"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MDSDGTNPLF ADPKRLLLDM AREHRLPELL RMVVERAAET PRVALARIWL AQRTADCAKC
61 LTPTECNGRP TCLQLVASAG RSAVDPRVEW TRLDGAFRRI PLGVRKVGRI AATGEPIEVP
121 NLSSPEPPEW VARPEWVRAE GIAGFGGQPL VHRGQVLGVL AVFARGAIGT ECMSWLRTIA
181 DHTAAAIATA RAFEQIEELR AKLELENEYL REEVTRTGAF GELVGGGPAL EAVARQIDLV
241 APTDSAVLLL GESGTGKELV AREVHRRSKR SARPLVKVNC AAVPRELYES EFFGHAKGAF
301 TGALRDRAGR FELADSGTLF LDEVGEIPLE LQAKLLRVLQ EGELERVGEE RTRKINVRLI
361 AATNRDLRAE AEAGRFRQDL YYRLSVFPVE LPPLRKRGED IPLLAEHFLA LTARKLGRSK
421 PRLTLANVQQ LQRYHWPGNV RELQHVIERA VITADGSRLT IDLPVGSPGT TSKAAAVPAA
481 GSEDRVLTDA EVRELEANNI RVALRQTKGK VSGPGGAAEL LGVRPTTLAS RIKVLGLAE
//