LOCUS VTR96831.1 539 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana transcriptional fis family : Sigma- 54 factor interaction domain-containing protein OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_2667 PE=4 SV=1: GAF_2: Sigma54_activat: HTH_8 protein. ACCESSION LR593886-5991 PROTEIN_ID VTR96831.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_10240" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|M5TEI6|M5TEI6_9PLAN ; ALN/Q_length_ratio=0.978 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Rhodopirellula sp. SWK7 GN=RRSWK_03549 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.964" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|A3ZSH2|A3ZSH2_9PLAN ; ALN/Q_length_ratio=0.974 ; DESCRIPTION=Hydrogenase-4 transcriptional activator OS=Blastopirellula marina DSM 3645 GN=DSM3645_14840 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.006" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|M5UK12|M5UK12_9PLAN ; ALN/Q_length_ratio=0.980 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Rhodopirellula sallentina SM41 GN=RSSM_02203 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.000" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|M5SAH5|M5SAH5_9PLAN ; ALN/Q_length_ratio=0.978 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Rhodopirellula europaea SH398 GN=RESH_06273 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.007" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|L7C5X6|L7C5X6_RHOBT ; ALN/Q_length_ratio=0.978 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Rhodopirellula baltica SWK14 GN=RBSWK_06445 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.985" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|B4D478|B4D478_9BACT ; ALN/Q_length_ratio=0.965 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_3716 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.027" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|Q7ULD5|Q7ULD5_RHOBA ; ALN/Q_length_ratio=0.978 ; DESCRIPTION=Hydrogenase-4 transcriptional activator OS=Rhodopirellula baltica (strain SH1) GN=hyfR PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.985" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|B9XF66|B9XF66_PEDPL ; ALN/Q_length_ratio=0.968 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Pedosphaera parvula (strain Ellin514) GN=Cflav_PD4242 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.021" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|F2AQI5|F2AQI5_RHOBT ; ALN/Q_length_ratio=0.976 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Rhodopirellula baltica WH47 GN=RBWH47_05104 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.985" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|K5DDT7|K5DDT7_RHOBT ; ALN/Q_length_ratio=0.976 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Rhodopirellula baltica SH28 GN=RBSH_04055 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.985" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|M5RPG9|M5RPG9_9PLAN ; ALN/Q_length_ratio=0.991 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Rhodopirellula maiorica SM1 GN=RMSM_07228 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.998" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|L7VVK2|L7VVK2_9BACT ; ALN/Q_length_ratio=0.987 ; DESCRIPTION=Hydrogenase-4 transcriptional activator OS=uncultured bacterium A1Q1_fos_1231 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.989" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|D2R1I6|D2R1I6_PIRSD ; ALN/Q_length_ratio=0.976 ; DESCRIPTION=Sigma 54 interacting domain protein OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_0276 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.000" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|M2AA55|M2AA55_9PLAN ; ALN/Q_length_ratio=0.978 ; DESCRIPTION=Transcriptional regulator, NifA subfamily, Fis Family OS=Rhodopirellula europaea 6C GN=RE6C_06025 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.007" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|D5SQM8|D5SQM8_PLAL2 ; ALN/Q_length_ratio=1.002 ; DESCRIPTION=Sigma-54 factor interaction domain-containing protein OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_2667 PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.978" /note="Pfam_scan:hit_1 (23..188); Pfam:PF13185.1:GAF_2; Pfam_type:Domain;HMM_aln_Length:144; HMM_Length:148; EVALUE:2.3e-11; BITSCORE: 44.4" /note="Pfam_scan:hit_2 (223..390); Pfam:PF00158.21:Sigma54_activat; Pfam_type:Domain;HMM_aln_Length:165; HMM_Length:168; EVALUE:1.2e-68; BITSCORE: 229.8" /note="Pfam_scan:hit_3 (491..535); Pfam:PF02954.14:HTH_8; Pfam_type:Domain;HMM_aln_Length:38; HMM_Length:42; EVALUE:0.00012; BITSCORE: 21.5" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0043167" /note="GO_domain:GO:0008134" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MDSDGTNPLF ADPKRLLLDM AREHRLPELL RMVVERAAET PRVALARIWL AQRTADCAKC 61 LTPTECNGRP TCLQLVASAG RSAVDPRVEW TRLDGAFRRI PLGVRKVGRI AATGEPIEVP 121 NLSSPEPPEW VARPEWVRAE GIAGFGGQPL VHRGQVLGVL AVFARGAIGT ECMSWLRTIA 181 DHTAAAIATA RAFEQIEELR AKLELENEYL REEVTRTGAF GELVGGGPAL EAVARQIDLV 241 APTDSAVLLL GESGTGKELV AREVHRRSKR SARPLVKVNC AAVPRELYES EFFGHAKGAF 301 TGALRDRAGR FELADSGTLF LDEVGEIPLE LQAKLLRVLQ EGELERVGEE RTRKINVRLI 361 AATNRDLRAE AEAGRFRQDL YYRLSVFPVE LPPLRKRGED IPLLAEHFLA LTARKLGRSK 421 PRLTLANVQQ LQRYHWPGNV RELQHVIERA VITADGSRLT IDLPVGSPGT TSKAAAVPAA 481 GSEDRVLTDA EVRELEANNI RVALRQTKGK VSGPGGAAEL LGVRPTTLAS RIKVLGLAE //