LOCUS VTR96787.1 773 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-5969
PROTEIN_ID VTR96787.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_10460"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.884 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-42 ;
Q/S_length_ratio=0.667"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.475 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=1e-37 ;
Q/S_length_ratio=1.543"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.339 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=4e-36 ;
Q/S_length_ratio=1.753"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.270 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=2.423"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.457 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=5e-34 ;
Q/S_length_ratio=1.276"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.314 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=1.823"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.268 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=0.630"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.387 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=4e-33 ;
Q/S_length_ratio=1.101"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.250 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=4e-32 ;
Q/S_length_ratio=1.295"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.325 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=1e-31 ;
Q/S_length_ratio=1.380"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.356 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=1.255"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.406 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=1.552"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.411 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=0.866"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.358 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-30 ;
Q/S_length_ratio=1.259"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.282 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=3e-30 ;
Q/S_length_ratio=1.395"
/note="Pfam_scan:hit_1 (45..113);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:1.7e-09; BITSCORE: 37.1"
/note="Pfam_scan:hit_2 (135..188);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:2.9e-14; BITSCORE: 52.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MAGTRLAALV RRLRRDVTPD LGACSDADLL ARFAATRDNA AFELLVWRHG AMVLSACRRV
61 LGHQQDAEDA FQAAFLVLAR KAATVRSGVT VPAWLHRVAV RIAQRAAGKR RTTVALVAEP
121 PARPAPDAVE QNELRGLLDA EIDRLREPYR RAFVLCYLEG LSNADAARVL GCPVGTIESR
181 LSAARRELRH RLSRQRVALP VGILALLVTN SVLGSDAVAT ATRAGVLAAD SGLRAAIGIV
241 GEPAVKLAER GLTMTKTRTW VVAVLGVALI GLVTGVGWAN RPIDSPVEPE VAVAPESAEP
301 AVAPPPTPVG ENAAKTEAWP LAKQIQWQGG NLFGVAPDGK SIFLLYNSNQ IYGISLVGKA
361 GTSIATSENK ILAAAVSPDG KYLATAEGAN GVKLRDATTG RVIEALWPEG ELPAVQVTFV
421 PDGTKLIALC TRTPSGGFAG RPSGPGSIEQ EREFQQLARV SVWDVATRKE LGHPAQTDKA
481 KLGGLPFYTL AGHGRFMLKS QPVYGANAEG EQVIKSRRIT ITDAVSGVAS KPIEVVGATL
541 APMRSEPLSP DGKTLVLSDY TQHELRFLDA ETGKDRFRVP AFRRPIKTVA FSPDGKLVAA
601 ATGISGGARR DDTIAAPSEV VIWDTATGRE RARLTDKETI RDYFAIAFSP DGSFLVAQAE
661 GSSKQITIWG HPPTPEPEPA KPVAKAAGGA EAPARFQGLF RDLAGEGVTD SRRIETLFLA
721 ALGRFPTDVE ARTLVSQLAR RDDKAAALRD LLGTLVETTE FKKHAEELGR LAK
//