LOCUS VTR96474.1 173 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Ktedonobacter racemifer
DSM 44963 GN=Krac_10224 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-5775
PROTEIN_ID VTR96474.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_12400"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D6TG28|D6TG28_9CHLR ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Ktedonobacter racemifer
DSM 44963 GN=Krac_10224 PE=4 SV=1 ; EVALUE=4e-60 ;
Q/S_length_ratio=0.989"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|B4D563|B4D563_9BACT ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase
sigma factor OS=Chthoniobacter flavus Ellin428
GN=CfE428DRAFT_4052 PE=3 SV=1 ; EVALUE=3e-55 ;
Q/S_length_ratio=0.989"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A069I6F1|A0A069I6F1_9BURK ;
ALN/Q_length_ratio=1.012 ; DESCRIPTION=RNA polymerase
sigma factor OS=Cupriavidus sp. SK-3 GN=CF70_020320 PE=3
SV=1 ; EVALUE=3e-52 ; Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|H1S7M0|H1S7M0_9BURK ;
ALN/Q_length_ratio=1.012 ; DESCRIPTION=RNA polymerase
sigma factor OS=Cupriavidus basilensis OR16 GN=OR16_19745
PE=3 SV=1 ; EVALUE=1e-51 ; Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|G0AGR0|G0AGR0_COLFT ;
ALN/Q_length_ratio=0.994 ; DESCRIPTION=RNA polymerase
sigma factor OS=Collimonas fungivorans (strain Ter331)
GN=CFU_1841 PE=3 SV=1 ; EVALUE=4e-47 ;
Q/S_length_ratio=0.951"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A069PZP3|A0A069PZP3_9BURK ;
ALN/Q_length_ratio=0.983 ; DESCRIPTION=RNA polymerase
sigma factor OS=Burkholderia glathei GN=BG61_03650 PE=3
SV=1 ; EVALUE=5e-47 ; Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0H0M8|L0H0M8_9GAMM ;
ALN/Q_length_ratio=0.971 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thioflavicoccus mobilis 8321 GN=Thimo_2457
PE=3 SV=1 ; EVALUE=1e-46 ; Q/S_length_ratio=0.983"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A0A089BN84|A0A089BN84_9BURK ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family protein OS=Burkholderia
xenovorans GN=DR64_150 PE=4 SV=1 ; EVALUE=4e-46 ;
Q/S_length_ratio=0.706"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|Q13ZH4|Q13ZH4_BURXL ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase
sigma factor OS=Burkholderia xenovorans (strain LB400)
GN=Bxe_A2458 PE=3 SV=1 ; EVALUE=4e-46 ;
Q/S_length_ratio=0.706"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|I2IL08|I2IL08_9BURK ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase
sigma factor OS=Burkholderia sp. Ch1-1 GN=BCh11DRAFT_06932
PE=3 SV=1 ; EVALUE=1e-45 ; Q/S_length_ratio=0.706"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A0A1FDS0|A0A0A1FDS0_9BURK ;
ALN/Q_length_ratio=1.035 ; DESCRIPTION=RNA polymerase
sigma factor OS=Collimonas arenae GN=LT85_2787 PE=4 SV=1 ;
EVALUE=3e-45 ; Q/S_length_ratio=0.911"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|B2T3N1|B2T3N1_BURPP ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase
sigma factor OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=Bphyt_1784 PE=3 SV=1 ; EVALUE=5e-45 ;
Q/S_length_ratio=0.709"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|J3DIH7|J3DIH7_9BURK ;
ALN/Q_length_ratio=1.040 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Herbaspirillum sp. CF444
GN=PMI16_00805 PE=4 SV=1 ; EVALUE=7e-45 ;
Q/S_length_ratio=0.951"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L2EM70|L2EM70_9BURK ;
ALN/Q_length_ratio=0.977 ; DESCRIPTION=RNA polymerase
sigma factor OS=Cupriavidus sp. HMR-1 GN=D769_07193 PE=3
SV=1 ; EVALUE=1e-44 ; Q/S_length_ratio=0.828"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|B2JG16|B2JG16_BURP8 ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase
sigma factor OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=Bphy_0909 PE=3 SV=1 ; EVALUE=1e-44 ;
Q/S_length_ratio=0.629"
/note="Pfam_scan:hit_1 (13..80);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:64; HMM_Length:71;
EVALUE:4.4e-14; BITSCORE: 51.8"
/note="Pfam_scan:hit_2 (108..161);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:2e-17; BITSCORE: 62.3"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MDADDRRRFE QVTLPHLDAA YNLARWLTRD AGAAEDVVQE AFLRAAKFFA SFRGGDGRPW
61 LLTVVRRAAY DWLRKQRAWA AVPFDEGAHD RADESLNPEH QVIRRADQQL LRRALEDLLP
121 EFREVIVLRE LEGLSYQEIA VVIGAPVGTV MSRLSRARKQ LQSLLVPSPE AEG
//