LOCUS VTR96474.1 173 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase, sigma-24 subunit, ECF subfamily OS=Ktedonobacter racemifer DSM 44963 GN=Krac_10224 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein. ACCESSION LR593886-5775 PROTEIN_ID VTR96474.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_12400" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|D6TG28|D6TG28_9CHLR ; ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Ktedonobacter racemifer DSM 44963 GN=Krac_10224 PE=4 SV=1 ; EVALUE=4e-60 ; Q/S_length_ratio=0.989" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|B4D563|B4D563_9BACT ; ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase sigma factor OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_4052 PE=3 SV=1 ; EVALUE=3e-55 ; Q/S_length_ratio=0.989" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|A0A069I6F1|A0A069I6F1_9BURK ; ALN/Q_length_ratio=1.012 ; DESCRIPTION=RNA polymerase sigma factor OS=Cupriavidus sp. SK-3 GN=CF70_020320 PE=3 SV=1 ; EVALUE=3e-52 ; Q/S_length_ratio=0.966" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|H1S7M0|H1S7M0_9BURK ; ALN/Q_length_ratio=1.012 ; DESCRIPTION=RNA polymerase sigma factor OS=Cupriavidus basilensis OR16 GN=OR16_19745 PE=3 SV=1 ; EVALUE=1e-51 ; Q/S_length_ratio=0.966" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|G0AGR0|G0AGR0_COLFT ; ALN/Q_length_ratio=0.994 ; DESCRIPTION=RNA polymerase sigma factor OS=Collimonas fungivorans (strain Ter331) GN=CFU_1841 PE=3 SV=1 ; EVALUE=4e-47 ; Q/S_length_ratio=0.951" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|A0A069PZP3|A0A069PZP3_9BURK ; ALN/Q_length_ratio=0.983 ; DESCRIPTION=RNA polymerase sigma factor OS=Burkholderia glathei GN=BG61_03650 PE=3 SV=1 ; EVALUE=5e-47 ; Q/S_length_ratio=0.966" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|L0H0M8|L0H0M8_9GAMM ; ALN/Q_length_ratio=0.971 ; DESCRIPTION=RNA polymerase sigma factor OS=Thioflavicoccus mobilis 8321 GN=Thimo_2457 PE=3 SV=1 ; EVALUE=1e-46 ; Q/S_length_ratio=0.983" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|A0A089BN84|A0A089BN84_9BURK ; ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family protein OS=Burkholderia xenovorans GN=DR64_150 PE=4 SV=1 ; EVALUE=4e-46 ; Q/S_length_ratio=0.706" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|Q13ZH4|Q13ZH4_BURXL ; ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase sigma factor OS=Burkholderia xenovorans (strain LB400) GN=Bxe_A2458 PE=3 SV=1 ; EVALUE=4e-46 ; Q/S_length_ratio=0.706" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|I2IL08|I2IL08_9BURK ; ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase sigma factor OS=Burkholderia sp. Ch1-1 GN=BCh11DRAFT_06932 PE=3 SV=1 ; EVALUE=1e-45 ; Q/S_length_ratio=0.706" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|A0A0A1FDS0|A0A0A1FDS0_9BURK ; ALN/Q_length_ratio=1.035 ; DESCRIPTION=RNA polymerase sigma factor OS=Collimonas arenae GN=LT85_2787 PE=4 SV=1 ; EVALUE=3e-45 ; Q/S_length_ratio=0.911" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|B2T3N1|B2T3N1_BURPP ; ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase sigma factor OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_1784 PE=3 SV=1 ; EVALUE=5e-45 ; Q/S_length_ratio=0.709" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|J3DIH7|J3DIH7_9BURK ; ALN/Q_length_ratio=1.040 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Herbaspirillum sp. CF444 GN=PMI16_00805 PE=4 SV=1 ; EVALUE=7e-45 ; Q/S_length_ratio=0.951" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|L2EM70|L2EM70_9BURK ; ALN/Q_length_ratio=0.977 ; DESCRIPTION=RNA polymerase sigma factor OS=Cupriavidus sp. HMR-1 GN=D769_07193 PE=3 SV=1 ; EVALUE=1e-44 ; Q/S_length_ratio=0.828" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|B2JG16|B2JG16_BURP8 ; ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase sigma factor OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=Bphy_0909 PE=3 SV=1 ; EVALUE=1e-44 ; Q/S_length_ratio=0.629" /note="Pfam_scan:hit_1 (13..80); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:64; HMM_Length:71; EVALUE:4.4e-14; BITSCORE: 51.8" /note="Pfam_scan:hit_2 (108..161); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54; EVALUE:2e-17; BITSCORE: 62.3" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MDADDRRRFE QVTLPHLDAA YNLARWLTRD AGAAEDVVQE AFLRAAKFFA SFRGGDGRPW 61 LLTVVRRAAY DWLRKQRAWA AVPFDEGAHD RADESLNPEH QVIRRADQQL LRRALEDLLP 121 EFREVIVLRE LEGLSYQEIA VVIGAPVGTV MSRLSRARKQ LQSLLVPSPE AEG //