LOCUS VTR96376.1 242 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma 28 : RNA polymerase sigma
factor for flagellar operon FliA OS=uncultured planctomycete
GN=HGMM_F11F07C13 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-5677
PROTEIN_ID VTR96376.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_13380"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|H5SCQ5|H5SCQ5_9BACT ;
ALN/Q_length_ratio=1.037 ; DESCRIPTION=RNA polymerase
sigma factor for flagellar operon FliA OS=uncultured
planctomycete GN=HGMM_F11F07C13 PE=4 SV=1 ; EVALUE=3e-74 ;
Q/S_length_ratio=0.920"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|Q748E9|Q748E9_GEOSL ;
ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase
sigma factor OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=fliA PE=3 SV=1 ; EVALUE=2e-46
; Q/S_length_ratio=0.968"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D7AEJ5|D7AEJ5_GEOSK ;
ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase
sigma factor OS=Geobacter sulfurreducens (strain DL-1 /
KN400) GN=fliA PE=3 SV=1 ; EVALUE=1e-45 ;
Q/S_length_ratio=0.968"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|Q39YK2|Q39YK2_GEOMG ;
ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase
sigma factor OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=fliA PE=3 SV=1 ; EVALUE=8e-45 ;
Q/S_length_ratio=0.968"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|H1L4J9|H1L4J9_GEOME ;
ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase
sigma factor OS=Geobacter metallireducens RCH3
GN=GeomeDRAFT_1021 PE=3 SV=1 ; EVALUE=8e-45 ;
Q/S_length_ratio=0.968"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A017RW14|A0A017RW14_9CLOT ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma factor OS=Fervidicella metallireducens AeB
GN=Q428_06125 PE=3 SV=1 ; EVALUE=3e-41 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A5G8Y3|A5G8Y3_GEOUR ;
ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase
sigma factor OS=Geobacter uraniireducens (strain Rf4)
GN=Gura_4108 PE=3 SV=1 ; EVALUE=8e-41 ;
Q/S_length_ratio=0.964"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|I9KVR5|I9KVR5_9THEO ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thermoanaerobacter siderophilus SR4
GN=ThesiDRAFT1_2277 PE=3 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=0.984"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M8DV39|M8DV39_THETY ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thermoanaerobacter thermohydrosulfuricus
WC1 GN=TthWC1_0110 PE=3 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=0.984"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|F1ZSH2|F1ZSH2_THEET ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thermoanaerobacter ethanolicus JW 200
GN=TheetDRAFT_0256 PE=3 SV=1 ; EVALUE=3e-40 ;
Q/S_length_ratio=0.984"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|G2MXC0|G2MXC0_9THEO ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thermoanaerobacter wiegelii Rt8.B1
GN=Thewi_1368 PE=3 SV=1 ; EVALUE=3e-40 ;
Q/S_length_ratio=0.984"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|I3VWB9|I3VWB9_THESW ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thermoanaerobacterium saccharolyticum
(strain DSM 8691 / JW/SL-YS485) GN=Tsac_1808 PE=3 SV=1 ;
EVALUE=4e-40 ; Q/S_length_ratio=0.984"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|W9E9E7|W9E9E7_9FIRM ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thermoanaerobacterium aotearoense SCUT27
GN=V518_1249 PE=3 SV=1 ; EVALUE=4e-40 ;
Q/S_length_ratio=0.984"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|D7AP56|D7AP56_THEM3 ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thermoanaerobacter mathranii (strain DSM
11426 / CIP 108742 / A3) GN=Tmath_1257 PE=3 SV=1 ;
EVALUE=5e-40 ; Q/S_length_ratio=0.984"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|D3T2L8|D3T2L8_THEIA ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thermoanaerobacter italicus (strain DSM
9252 / Ab9) GN=Thit_1206 PE=3 SV=1 ; EVALUE=5e-40 ;
Q/S_length_ratio=0.984"
/note="Pfam_scan:hit_1 (20..92);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:6.1e-13; BITSCORE: 48.1"
/note="Pfam_scan:hit_2 (174..224);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:48; HMM_Length:54;
EVALUE:3.6e-10; BITSCORE: 39.1"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSGNIQAYQR QADQQRRDEL IVSHLPLVKH VIGRLIGDTP PGVDVENLES AGVLGLVEAA
61 SKFDPSRNAQ FKTFAYLRIR GAIVDEMRRN SPLPQHVHTR LAAVRRACRT LPHPITVEAI
121 AAATGMTEDE VTDTLAAERV AKTTSWEQTA DANGMEPAVA AEEPSVELER WETIQQLTDA
181 IEGLDSKERI AVTLYYREDL RLKEIAEVMK LSVSRVSRLL SKATFELGER LKALKAGAFV
241 VS
//