LOCUS VTR96376.1 242 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna sigma 28 : RNA polymerase sigma factor for flagellar operon FliA OS=uncultured planctomycete GN=HGMM_F11F07C13 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein. ACCESSION LR593886-5677 PROTEIN_ID VTR96376.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_13380" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|H5SCQ5|H5SCQ5_9BACT ; ALN/Q_length_ratio=1.037 ; DESCRIPTION=RNA polymerase sigma factor for flagellar operon FliA OS=uncultured planctomycete GN=HGMM_F11F07C13 PE=4 SV=1 ; EVALUE=3e-74 ; Q/S_length_ratio=0.920" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|Q748E9|Q748E9_GEOSL ; ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase sigma factor OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=fliA PE=3 SV=1 ; EVALUE=2e-46 ; Q/S_length_ratio=0.968" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|D7AEJ5|D7AEJ5_GEOSK ; ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase sigma factor OS=Geobacter sulfurreducens (strain DL-1 / KN400) GN=fliA PE=3 SV=1 ; EVALUE=1e-45 ; Q/S_length_ratio=0.968" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|Q39YK2|Q39YK2_GEOMG ; ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase sigma factor OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=fliA PE=3 SV=1 ; EVALUE=8e-45 ; Q/S_length_ratio=0.968" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|H1L4J9|H1L4J9_GEOME ; ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase sigma factor OS=Geobacter metallireducens RCH3 GN=GeomeDRAFT_1021 PE=3 SV=1 ; EVALUE=8e-45 ; Q/S_length_ratio=0.968" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|A0A017RW14|A0A017RW14_9CLOT ; ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase sigma factor OS=Fervidicella metallireducens AeB GN=Q428_06125 PE=3 SV=1 ; EVALUE=3e-41 ; Q/S_length_ratio=1.000" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|A5G8Y3|A5G8Y3_GEOUR ; ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase sigma factor OS=Geobacter uraniireducens (strain Rf4) GN=Gura_4108 PE=3 SV=1 ; EVALUE=8e-41 ; Q/S_length_ratio=0.964" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|I9KVR5|I9KVR5_9THEO ; ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase sigma factor OS=Thermoanaerobacter siderophilus SR4 GN=ThesiDRAFT1_2277 PE=3 SV=1 ; EVALUE=2e-40 ; Q/S_length_ratio=0.984" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|M8DV39|M8DV39_THETY ; ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase sigma factor OS=Thermoanaerobacter thermohydrosulfuricus WC1 GN=TthWC1_0110 PE=3 SV=1 ; EVALUE=2e-40 ; Q/S_length_ratio=0.984" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|F1ZSH2|F1ZSH2_THEET ; ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase sigma factor OS=Thermoanaerobacter ethanolicus JW 200 GN=TheetDRAFT_0256 PE=3 SV=1 ; EVALUE=3e-40 ; Q/S_length_ratio=0.984" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|G2MXC0|G2MXC0_9THEO ; ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase sigma factor OS=Thermoanaerobacter wiegelii Rt8.B1 GN=Thewi_1368 PE=3 SV=1 ; EVALUE=3e-40 ; Q/S_length_ratio=0.984" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|I3VWB9|I3VWB9_THESW ; ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase sigma factor OS=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) GN=Tsac_1808 PE=3 SV=1 ; EVALUE=4e-40 ; Q/S_length_ratio=0.984" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|W9E9E7|W9E9E7_9FIRM ; ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase sigma factor OS=Thermoanaerobacterium aotearoense SCUT27 GN=V518_1249 PE=3 SV=1 ; EVALUE=4e-40 ; Q/S_length_ratio=0.984" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|D7AP56|D7AP56_THEM3 ; ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase sigma factor OS=Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3) GN=Tmath_1257 PE=3 SV=1 ; EVALUE=5e-40 ; Q/S_length_ratio=0.984" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|D3T2L8|D3T2L8_THEIA ; ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase sigma factor OS=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) GN=Thit_1206 PE=3 SV=1 ; EVALUE=5e-40 ; Q/S_length_ratio=0.984" /note="Pfam_scan:hit_1 (20..92); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71; EVALUE:6.1e-13; BITSCORE: 48.1" /note="Pfam_scan:hit_2 (174..224); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:48; HMM_Length:54; EVALUE:3.6e-10; BITSCORE: 39.1" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MSGNIQAYQR QADQQRRDEL IVSHLPLVKH VIGRLIGDTP PGVDVENLES AGVLGLVEAA 61 SKFDPSRNAQ FKTFAYLRIR GAIVDEMRRN SPLPQHVHTR LAAVRRACRT LPHPITVEAI 121 AAATGMTEDE VTDTLAAERV AKTTSWEQTA DANGMEPAVA AEEPSVELER WETIQQLTDA 181 IEGLDSKERI AVTLYYREDL RLKEIAEVMK LSVSRVSRLL SKATFELGER LKALKAGAFV 241 VS //