LOCUS VTR96344.1 184 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase subunit sigma-24 : RNA
polymerase, sigma-70 region OS=Stigmatella aurantiaca
(strain DW4/3-1) GN=STAUR_2151 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-5645
PROTEIN_ID VTR96344.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_13700"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|E3FZU0|E3FZU0_STIAD ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase,
sigma-70 region OS=Stigmatella aurantiaca (strain DW4/3-1)
GN=STAUR_2151 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=0.906"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|Q08U01|Q08U01_STIAD ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=Sigma factor, ECF
subfamily, putative OS=Stigmatella aurantiaca (strain
DW4/3-1) GN=STIAU_2198 PE=4 SV=1 ; EVALUE=2e-15 ;
Q/S_length_ratio=0.786"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0A085WIR0|A0A085WIR0_9DELT ;
ALN/Q_length_ratio=0.853 ; DESCRIPTION=RNA polymerase
sigma factor RpoE OS=Hyalangium minutum GN=DB31_8056 PE=4
SV=1 ; EVALUE=2e-14 ; Q/S_length_ratio=0.920"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A0A085XC17|A0A085XC17_9DELT ;
ALN/Q_length_ratio=0.853 ; DESCRIPTION=RNA polymerase
sigma factor RpoE OS=Enhygromyxa salina GN=DB30_3767 PE=4
SV=1 ; EVALUE=2e-14 ; Q/S_length_ratio=0.920"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A069DJM5|A0A069DJM5_9BACL ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=RNA polymerase
sigma factor OS=Paenibacillus sp. TCA20 GN=TCA2_5107 PE=3
SV=1 ; EVALUE=2e-14 ; Q/S_length_ratio=0.974"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A084SEJ8|A0A084SEJ8_9DELT ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=RNA polymerase
sigma 70 OS=Cystobacter violaceus Cb vi76 GN=Q664_51830
PE=4 SV=1 ; EVALUE=4e-13 ; Q/S_length_ratio=0.968"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|E0I8D9|E0I8D9_9BACL ;
ALN/Q_length_ratio=0.913 ; DESCRIPTION=RNA polymerase
sigma factor OS=Paenibacillus curdlanolyticus YK9
GN=PaecuDRAFT_1890 PE=3 SV=1 ; EVALUE=2e-12 ;
Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|F8CCP1|F8CCP1_MYXFH ;
ALN/Q_length_ratio=0.853 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Myxococcus fulvus (strain ATCC BAA-855
/ HW-1) GN=LILAB_01840 PE=4 SV=1 ; EVALUE=3e-12 ;
Q/S_length_ratio=0.915"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A0A0A2UKP9|A0A0A2UKP9_9BACL ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Paenibacillus sp. MAEPY1
GN=P363_0114165 PE=4 SV=1 ; EVALUE=3e-12 ;
Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|W4BCP5|W4BCP5_9BACL ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=RNA polymerase
sigma factor OS=Paenibacillus sp. FSL R5-192 GN=C161_02960
PE=3 SV=1 ; EVALUE=3e-12 ; Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A0A0A2TZ85|A0A0A2TZ85_9BACL ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Paenibacillus sp. MAEPY2
GN=P364_0117575 PE=4 SV=1 ; EVALUE=3e-12 ;
Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|W4BUE9|W4BUE9_9BACL ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=RNA polymerase
sigma factor OS=Paenibacillus sp. FSL H7-689 GN=C170_21824
PE=3 SV=1 ; EVALUE=3e-12 ; Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|H8MS25|H8MS25_CORCM ;
ALN/Q_length_ratio=0.853 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Corallococcus coralloides (strain ATCC
25202 / DSM 2259 / NBRC 100086 / M2) GN=algU PE=4 SV=1 ;
EVALUE=4e-12 ; Q/S_length_ratio=0.920"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|X6E0L9|X6E0L9_9RHIZ ;
ALN/Q_length_ratio=0.772 ; DESCRIPTION=RNA polymerase
sigma70 OS=Mesorhizobium sp. LNHC220B00 GN=X739_27290 PE=4
SV=1 ; EVALUE=2e-11 ; Q/S_length_ratio=1.070"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|X6F8F5|X6F8F5_9RHIZ ;
ALN/Q_length_ratio=0.772 ; DESCRIPTION=RNA polymerase
sigma70 OS=Mesorhizobium sp. LNHC209A00 GN=X738_17320 PE=4
SV=1 ; EVALUE=5e-11 ; Q/S_length_ratio=1.070"
/note="Pfam_scan:hit_1 (13..81);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:6.3e-09; BITSCORE: 35.3"
/note="Pfam_scan:hit_2 (115..167);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:4.3e-11; BITSCORE: 42.1"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MLTNEQRQRF GAWVAAVGPR AVAYARSLVH DESRADDVVQ ECFYRLLRRA DAYDLERDGV
61 KILFKAISNL CINQATREKA LLSLNSAPQA DGEPVPIADP VALRPEQILQ HRELEQAIRD
121 ALQVLSPLQR AAIELRALGM SKEEIGDALG VSATNAGVLV HRGRQALARE LESLRSVADF
181 DEKV
//