LOCUS VTR96273.1 601 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-5574
PROTEIN_ID VTR96273.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_14410"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.439 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-44 ;
Q/S_length_ratio=1.417"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.463 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=4e-42 ;
Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.474 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=4e-42 ;
Q/S_length_ratio=1.073"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.488 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=1.884"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.416 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=1.007"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.394 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=6e-37 ;
Q/S_length_ratio=0.992"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.486 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=4e-36 ;
Q/S_length_ratio=0.856"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.433 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=5e-36 ;
Q/S_length_ratio=1.085"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.443 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=0.545"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.321 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=0.490"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.406 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=0.976"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.641 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=1.207"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.468 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=1.051"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.717 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=5e-33 ;
Q/S_length_ratio=1.351"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.414 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=8e-33 ;
Q/S_length_ratio=0.830"
/note="Pfam_scan:hit_1 (72..145);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:64; HMM_Length:71;
EVALUE:2.8e-12; BITSCORE: 46.0"
/note="Pfam_scan:hit_2 (164..217);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:7.4e-08; BITSCORE: 31.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MRPPQKTWTP DRFDWNYFTA YPTARRVVIV AQTTEMIRAL TRGMAAEAST EPDPELIRRF
61 LGSGGEDVFE ILVRRHGPMV YRVCRRVAGH EQDAEDAFQA TFLVLARNLR ALRHVPSLAS
121 WLHGVARRVA LKAKARVAAL KRREQRAAAP ESTAHVDPAW SDVGAALDEE LGRLPERWRL
181 PLVLCYLEAR TQDEAARELG WGKSTLRRRL TEARAALAAR LAQRGVWPTV LAGVLVSDCT
241 SPAALPRELV GPTVGAAAAI ASGRPGPTVA AGVSNLTEGV FTVSRLKLKV AALVAAVLVL
301 GAGAPLRVSS AELPAGPAGV EEIRTADGPG PQKADTKPAD ELERWQGRWR VTTAAINGKD
361 RKDERIGLAE IVVTGKKVTL RFRHGSPTEG ASVDGELELI PIKAKKGALA DPGFIVHMLI
421 PVTGNYHFTN GQLVICYYEP GSEEGAERPA GFGSQEGSKR ELYRLERVVD KEPPAQLTPK
481 KRAQAPGEFG EGPEPAVPDL SGRWQGDEWG QIELAMTKRG TYVGTYTDTF GPVKGSVTLE
541 WVPREQRFHG TWGEGKDRFG TISVRLHGRE IRGAFTTDPA SRISPGSPAL SDLKWVPQPT
601 R
//