LOCUS VTR96236.1 192 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase
sigma-70 factor, ECF subfamily OS=Phenylobacterium zucineum
(strain HLK1) GN=PHZ_c2577 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-5537
PROTEIN_ID VTR96236.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_14780"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|B4RH38|B4RH38_PHEZH ;
ALN/Q_length_ratio=0.948 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily OS=Phenylobacterium
zucineum (strain HLK1) GN=PHZ_c2577 PE=4 SV=1 ;
EVALUE=4e-39 ; Q/S_length_ratio=0.669"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|Q2INY6|Q2INY6_ANADE ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA polymerase,
sigma subunit, ECF family OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=Adeh_0742 PE=4 SV=1 ; EVALUE=3e-38 ;
Q/S_length_ratio=0.681"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D1C9S1|D1C9S1_SPHTD ;
ALN/Q_length_ratio=0.969 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=Sthe_3164 PE=4
SV=1 ; EVALUE=4e-37 ; Q/S_length_ratio=0.625"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|B8JDQ0|B8JDQ0_ANAD2 ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_0793
PE=4 SV=1 ; EVALUE=5e-37 ; Q/S_length_ratio=0.681"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A0A024RJE7|A0A024RJE7_9BURK ;
ALN/Q_length_ratio=1.062 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Burkholderia dolosa PC543
GN=BDSB_23965 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=0.653"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A076MNJ6|A0A076MNJ6_AMYME ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=Putative RNA
polymerase ECF-subfamily sigma factor OS=Amycolatopsis
methanolica 239 GN=AMETH_2112 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.660"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|T0IYT3|T0IYT3_9SPHN ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=RNA polymerase
sigma factor SigJ OS=Sphingobium lactosutens DS20
GN=RLDS_05255 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.669"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|B9MBJ5|B9MBJ5_ACIET ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Acidovorax ebreus
(strain TPSY) GN=Dtpsy_2236 PE=4 SV=1 ; EVALUE=4e-36 ;
Q/S_length_ratio=0.669"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|V2GUD2|V2GUD2_9BURK ;
ALN/Q_length_ratio=1.005 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Cupriavidus sp. HPC(L) GN=B551_0220825
PE=4 SV=1 ; EVALUE=8e-36 ; Q/S_length_ratio=0.593"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|Q1GKD2|Q1GKD2_RUEST ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Ruegeria sp. (strain
TM1040) GN=TM1040_0151 PE=4 SV=1 ; EVALUE=8e-36 ;
Q/S_length_ratio=0.658"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A023Y2B4|A0A023Y2B4_9GAMM ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Stenotrophomonas rhizophila
GN=DX03_07355 PE=4 SV=1 ; EVALUE=9e-36 ;
Q/S_length_ratio=0.644"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|H0HV39|H0HV39_9RHIZ ;
ALN/Q_length_ratio=0.932 ; DESCRIPTION=RNA polymerase
sigma factor SigJ OS=Mesorhizobium alhagi CCNWXJ12-2
GN=MAXJ12_20212 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=0.674"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A1W9G2|A1W9G2_ACISJ ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase,
sigma subunit, ECF family OS=Acidovorax sp. (strain JS42)
GN=Ajs_2746 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=0.651"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L7H3U3|L7H3U3_XANCT ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=Putative ECF-sigma
factor OS=Xanthomonas translucens DAR61454 GN=A989_06758
PE=4 SV=1 ; EVALUE=2e-35 ; Q/S_length_ratio=0.655"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A0A1VN91|A0A0A1VN91_9BURK ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24 homolog
OS=Acidovorax sp. MR-S7 GN=AVS7_04459 PE=4 SV=1 ;
EVALUE=2e-35 ; Q/S_length_ratio=0.638"
/note="Pfam_scan:hit_1 (4..67); Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:1.2e-13; BITSCORE: 50.4"
/note="Pfam_scan:hit_2 (94..146);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:9.6e-11; BITSCORE: 40.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTDVNTLRPR MMSVAYRMLG SVADAEDAVQ DAFVRYQTAG GVSSPEGFLI RTTTRVCIDR
61 LRVRRRCAGS AGSRVPESVE KGGREPVRAE SLTPAFLVLL ERLTPDERTA FLLRAVFDYE
121 FAAIGTLVGR SPSAVRQLVS RTRRQLGLDG ERRFRATWTR AAALAEKFVA ACRTGDVRAV
181 ERMFAEGERG IG
//