LOCUS VTR96236.1 192 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase sigma-70 factor, ECF subfamily OS=Phenylobacterium zucineum (strain HLK1) GN=PHZ_c2577 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein. ACCESSION LR593886-5537 PROTEIN_ID VTR96236.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_14780" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|B4RH38|B4RH38_PHEZH ; ALN/Q_length_ratio=0.948 ; DESCRIPTION=RNA polymerase sigma-70 factor, ECF subfamily OS=Phenylobacterium zucineum (strain HLK1) GN=PHZ_c2577 PE=4 SV=1 ; EVALUE=4e-39 ; Q/S_length_ratio=0.669" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|Q2INY6|Q2INY6_ANADE ; ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA polymerase, sigma subunit, ECF family OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=Adeh_0742 PE=4 SV=1 ; EVALUE=3e-38 ; Q/S_length_ratio=0.681" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|D1C9S1|D1C9S1_SPHTD ; ALN/Q_length_ratio=0.969 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) GN=Sthe_3164 PE=4 SV=1 ; EVALUE=4e-37 ; Q/S_length_ratio=0.625" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|B8JDQ0|B8JDQ0_ANAD2 ; ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_0793 PE=4 SV=1 ; EVALUE=5e-37 ; Q/S_length_ratio=0.681" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|A0A024RJE7|A0A024RJE7_9BURK ; ALN/Q_length_ratio=1.062 ; DESCRIPTION=RNA polymerase subunit sigma-24 OS=Burkholderia dolosa PC543 GN=BDSB_23965 PE=4 SV=1 ; EVALUE=1e-36 ; Q/S_length_ratio=0.653" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|A0A076MNJ6|A0A076MNJ6_AMYME ; ALN/Q_length_ratio=0.964 ; DESCRIPTION=Putative RNA polymerase ECF-subfamily sigma factor OS=Amycolatopsis methanolica 239 GN=AMETH_2112 PE=4 SV=1 ; EVALUE=2e-36 ; Q/S_length_ratio=0.660" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|T0IYT3|T0IYT3_9SPHN ; ALN/Q_length_ratio=0.938 ; DESCRIPTION=RNA polymerase sigma factor SigJ OS=Sphingobium lactosutens DS20 GN=RLDS_05255 PE=4 SV=1 ; EVALUE=2e-36 ; Q/S_length_ratio=0.669" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|B9MBJ5|B9MBJ5_ACIET ; ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Acidovorax ebreus (strain TPSY) GN=Dtpsy_2236 PE=4 SV=1 ; EVALUE=4e-36 ; Q/S_length_ratio=0.669" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|V2GUD2|V2GUD2_9BURK ; ALN/Q_length_ratio=1.005 ; DESCRIPTION=RNA polymerase subunit sigma-24 OS=Cupriavidus sp. HPC(L) GN=B551_0220825 PE=4 SV=1 ; EVALUE=8e-36 ; Q/S_length_ratio=0.593" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|Q1GKD2|Q1GKD2_RUEST ; ALN/Q_length_ratio=0.953 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Ruegeria sp. (strain TM1040) GN=TM1040_0151 PE=4 SV=1 ; EVALUE=8e-36 ; Q/S_length_ratio=0.658" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|A0A023Y2B4|A0A023Y2B4_9GAMM ; ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase subunit sigma-24 OS=Stenotrophomonas rhizophila GN=DX03_07355 PE=4 SV=1 ; EVALUE=9e-36 ; Q/S_length_ratio=0.644" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|H0HV39|H0HV39_9RHIZ ; ALN/Q_length_ratio=0.932 ; DESCRIPTION=RNA polymerase sigma factor SigJ OS=Mesorhizobium alhagi CCNWXJ12-2 GN=MAXJ12_20212 PE=4 SV=1 ; EVALUE=1e-35 ; Q/S_length_ratio=0.674" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|A1W9G2|A1W9G2_ACISJ ; ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase, sigma subunit, ECF family OS=Acidovorax sp. (strain JS42) GN=Ajs_2746 PE=4 SV=1 ; EVALUE=1e-35 ; Q/S_length_ratio=0.651" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|L7H3U3|L7H3U3_XANCT ; ALN/Q_length_ratio=0.938 ; DESCRIPTION=Putative ECF-sigma factor OS=Xanthomonas translucens DAR61454 GN=A989_06758 PE=4 SV=1 ; EVALUE=2e-35 ; Q/S_length_ratio=0.655" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|A0A0A1VN91|A0A0A1VN91_9BURK ; ALN/Q_length_ratio=0.974 ; DESCRIPTION=DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog OS=Acidovorax sp. MR-S7 GN=AVS7_04459 PE=4 SV=1 ; EVALUE=2e-35 ; Q/S_length_ratio=0.638" /note="Pfam_scan:hit_1 (4..67); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71; EVALUE:1.2e-13; BITSCORE: 50.4" /note="Pfam_scan:hit_2 (94..146); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54; EVALUE:9.6e-11; BITSCORE: 40.9" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MTDVNTLRPR MMSVAYRMLG SVADAEDAVQ DAFVRYQTAG GVSSPEGFLI RTTTRVCIDR 61 LRVRRRCAGS AGSRVPESVE KGGREPVRAE SLTPAFLVLL ERLTPDERTA FLLRAVFDYE 121 FAAIGTLVGR SPSAVRQLVS RTRRQLGLDG ERRFRATWTR AAALAEKFVA ACRTGDVRAV 181 ERMFAEGERG IG //