LOCUS VTR95973.1 739 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-5274
PROTEIN_ID VTR95973.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_17410"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.391 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=1.204"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.449 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=1.533"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.401 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=6e-38 ;
Q/S_length_ratio=1.484"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.380 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=1.219"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.350 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=1.320"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.344 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=1.292"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.292 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=2.317"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.402 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=4e-33 ;
Q/S_length_ratio=1.743"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.338 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=4e-33 ;
Q/S_length_ratio=1.053"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.398 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=0.828"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.406 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=3e-32 ;
Q/S_length_ratio=0.602"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.355 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=5e-32 ;
Q/S_length_ratio=1.238"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.356 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=4e-31 ;
Q/S_length_ratio=1.661"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.410 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=0.671"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.359 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=2e-30 ;
Q/S_length_ratio=0.775"
/note="Pfam_scan:hit_1 (38..108);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:3.7e-07; BITSCORE: 29.6"
/note="Pfam_scan:hit_2 (129..182);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:3.6e-12; BITSCORE: 45.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MNAILTKLNR LSTAPGPSSD GALLTAFLAG DQSAFAVLVH RYAGLVFASC QRILHHRQDA
61 EDALQATFLV LARRAGDIWP REAVASWLFG VARRVSLRAR AVRTRRSTRE CPLEDVATTE
121 PARPDSDLAE VVHRIVCRLP EIYRSAVIAC DLQGLSRKEA AERLGWSEGT LSGRLARARE
181 LLATRLRRVG LSLPAGGLAA VCAGPESAPA ATIQSTIDLA IGAGPGVSAP VAALTEGVVS
241 SMALFKLKAM TAVVFAACAL GFGAFAASGS GSGDGAGTQP GQSQKSSAPV PVAGKLGEPP
301 AKGTVQRGPR LGLAQEELLI LIEELKAANK QNVDPEALAR LRAQIEVIGR LLDPNDAMMT
361 PVPPVKPGAD LDPLQGSWRV TSVKDGSKSL KIEPSDPWVI EISGSTMKMP YREATGAWKQ
421 RDYKIAVEFA LQKPEAIMQR NTIDLIAPRE PVGRGIYEFT ASEFACMQCH KASDNLRTLV
481 TGRFPNENVL CEPALKDKAT KHAAGLRLAF TIDGKRPTKF GGEGVIVFEM VRADAKPVGT
541 DDERWRELKS RLDALGKQAG DERASDRVFA QLWALVESTQ LESQQARLDL AHANAQLQTT
601 KKAAELAETR WAGANQRWQL AVREYEDAKS ARAAKDKPVP AVAPGGVAPA GSVFTIHIRT
661 LTAPEKVINV KATGKETVLD GLLQAIDDVS IMTGTVSTWL VRGKEVLPID LAGIKNGETK
721 TNYVLKAGDQ LFVQVKAEK
//