LOCUS VTR95963.1 486 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna terminal phosphate cyclase : RNA-
splicing ligase RtcB (Fragment) OS=uncultured planctomycete
GN=HGMM_F01A04C27 PE=3 SV=1: RtcB protein.
ACCESSION LR593886-5264
PROTEIN_ID VTR95963.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_17510"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D6CJZ2|D6CJZ2_9BACT ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=RNA-splicing ligase
RtcB OS=uncultured bacterium GN=JG3_0090 PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DKC5|L0DKC5_SINAD ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA-splicing ligase
RtcB OS=Singulisphaera acidiphila (strain ATCC BAA-1392 /
DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5138 PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.994"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|W8NTZ2|W8NTZ2_9EURY ;
ALN/Q_length_ratio=0.981 ; DESCRIPTION=tRNA-splicing
ligase RtcB OS=Thermococcus nautili GN=BD01_1004 PE=3 SV=1
; EVALUE=0.0 ; Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|E1YC30|E1YC30_9DELT ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=RNA-splicing ligase
RtcB OS=uncultured Desulfobacterium sp. GN=N47_G34480 PE=3
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|B8DYS7|B8DYS7_DICTD ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA-splicing ligase
RtcB OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724)
GN=Dtur_0127 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A075WCM0|A0A075WCM0_ARCFL ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=tRNA-splicing
ligase RtcB OS=Archaeoglobus fulgidus DSM 8774
GN=AFULGI_00009450 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.012"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|B5ID78|B5ID78_ACIB4 ;
ALN/Q_length_ratio=0.994 ; DESCRIPTION=tRNA-splicing
ligase RtcB OS=Aciduliprofundum boonei (strain DSM 19572 /
T469) GN=rtcB PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|D5MFV6|D5MFV6_9BACT ;
ALN/Q_length_ratio=0.959 ; DESCRIPTION=RNA-splicing ligase
RtcB OS=Candidatus Methylomirabilis oxyfera GN=DAMO_1577
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.012"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|B6YVC4|B6YVC4_THEON ;
ALN/Q_length_ratio=0.981 ; DESCRIPTION=tRNA-splicing
ligase RtcB OS=Thermococcus onnurineus (strain NA1)
GN=TON_0714 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|B5YBP3|B5YBP3_DICT6 ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA-splicing ligase
RtcB OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM
3960 / H-6-12) GN=DICTH_1853 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8R433|E8R433_ISOPI ;
ALN/Q_length_ratio=0.998 ; DESCRIPTION=RNA-splicing ligase
RtcB OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 /
IS1B) GN=Isop_1031 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.994"
/note="BLAST_uniprot:hit_13 ; ACCESSION=O29399 ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=tRNA-splicing
ligase RtcB OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rtcB PE=3
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.008"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|B5IDC7|B5IDC7_ACIB4 ;
ALN/Q_length_ratio=0.994 ; DESCRIPTION=tRNA-splicing
ligase RtcB OS=Aciduliprofundum boonei (strain DSM 19572 /
T469) GN=ABOONEI_1529 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0HM66|L0HM66_ACIS0 ;
ALN/Q_length_ratio=0.994 ; DESCRIPTION=tRNA-splicing
ligase RtcB OS=Aciduliprofundum sp. (strain MAR08-339)
GN=AciM339_1019 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|H5S894|H5S894_9BACT ;
ALN/Q_length_ratio=0.914 ; DESCRIPTION=RNA-splicing ligase
RtcB (Fragment) OS=uncultured planctomycete
GN=HGMM_F01A04C27 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.095"
/note="Pfam_scan:hit_1 (27..486); Pfam:PF01139.12:RtcB;
Pfam_type:Family;HMM_aln_Length:419; HMM_Length:420;
EVALUE:1.7e-142; BITSCORE: 475.3"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0016874"
/note="Enzyme_Code:EC:6.5.1"
BEGIN
1 MKSGFTGPLE SIGCCCHRIP KSYKTGMRVD GHIYANDKLL EAIRKDQAPD QVANVAMLPG
61 IQVASIAMPD IHWGYGFCIG GVCATDPEEG GVISPGGVGY DINCGVRFIK TNLYLDDVKH
121 HMKKLVKALF YTVPSGAGRT GRYKFDATET RRLMGEGPRF VIDRGLGVAR DLDHTEANGR
181 IDDADPHQVS DHAVKRGAEQ CGTLGSGNHF LEVQVVDSVF DADVAKVFGL ELNQICVMIH
241 SGSRGLGYQV CDDSLAAFRN CSTKYGFELP DRQLACAPVD SPEGRKYIAA MRAAANYGFC
301 NRQLLMQQAR EVFAGVFGRS WEDLGMEQLY DVAHNIAKLE EHTVDGKKKK VWVHRKGATR
361 AFPAGHPEVP EKYRTVGQPV IIPGDMGRAS WVLVGSQGAM EKTFGTTCHG AGRAMSRTAA
421 LKDGAGRRID RELEHKGVIA MASSRNGLAE EQPKAYKNVD DVVDVVHEAD LSRRVARMRP
481 LGVIKG
//