LOCUS VTR95588.1 195 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-70 ecf- rhodopirellula
baltica : RNA polymerase sigma-70 ECF-like, Rhodopirellula
baltica OS=Rhodopirellula sallentina SM41 GN=RSSM_00487
PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-4889
PROTEIN_ID VTR95588.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_21260"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|M5U9D5|M5U9D5_9PLAN ;
ALN/Q_length_ratio=0.877 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like, Rhodopirellula baltica
OS=Rhodopirellula sallentina SM41 GN=RSSM_00487 PE=4 SV=1
; EVALUE=2e-18 ; Q/S_length_ratio=1.134"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|X0UJ41|X0UJ41_9ZZZZ ;
ALN/Q_length_ratio=0.523 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_S12130 (Fragment) OS=marine
sediment metagenome GN=S01H1_42321 PE=4 SV=1 ;
EVALUE=4e-18 ; Q/S_length_ratio=1.598"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5TC71|M5TC71_9PLAN ;
ALN/Q_length_ratio=0.882 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like, Rhodopirellula baltica
OS=Rhodopirellula sp. SWK7 GN=RRSWK_06153 PE=4 SV=1 ;
EVALUE=6e-18 ; Q/S_length_ratio=1.114"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A6DTI8|A6DTI8_9BACT ;
ALN/Q_length_ratio=0.903 ; DESCRIPTION=Putative RNA
polymerase sigma-W factor OS=Lentisphaera araneosa
HTCC2155 GN=LNTAR_01737 PE=4 SV=1 ; EVALUE=2e-16 ;
Q/S_length_ratio=1.083"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F2AKA4|F2AKA4_RHOBT ;
ALN/Q_length_ratio=0.903 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica WH47 GN=RBWH47_03890 PE=4 SV=1 ; EVALUE=3e-16 ;
Q/S_length_ratio=0.961"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|Q7ULE1|Q7ULE1_RHOBA ;
ALN/Q_length_ratio=0.903 ; DESCRIPTION=Probable
extracytoplasmic function alternative sigma factor
OS=Rhodopirellula baltica (strain SH1) GN=sigE PE=4 SV=1 ;
EVALUE=2e-15 ; Q/S_length_ratio=0.789"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K5DDU2|K5DDU2_RHOBT ;
ALN/Q_length_ratio=0.903 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SH28 GN=RBSH_04060 PE=4 SV=1 ; EVALUE=2e-15 ;
Q/S_length_ratio=0.961"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L7C5Y1|L7C5Y1_RHOBT ;
ALN/Q_length_ratio=0.903 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SWK14 GN=RBSWK_06450 PE=4 SV=1 ; EVALUE=2e-15 ;
Q/S_length_ratio=0.961"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|K6YP44|K6YP44_9ALTE ;
ALN/Q_length_ratio=0.841 ; DESCRIPTION=Uncharacterized
protein OS=Glaciecola lipolytica E3 GN=GLIP_0469 PE=4 SV=1
; EVALUE=5e-15 ; Q/S_length_ratio=1.127"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M2B194|M2B194_9PLAN ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula europaea 6C GN=RE6C_03321
PE=3 SV=1 ; EVALUE=6e-15 ; Q/S_length_ratio=1.032"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|F2AQW8|F2AQW8_RHOBT ;
ALN/Q_length_ratio=0.846 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_00721 PE=3 SV=1 ; EVALUE=1e-14 ;
Q/S_length_ratio=1.134"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5T5I1|M5T5I1_9PLAN ;
ALN/Q_length_ratio=0.667 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like, Rhodopirellula baltica
OS=Rhodopirellula sp. SWK7 GN=RRSWK_06772 PE=4 SV=1 ;
EVALUE=2e-14 ; Q/S_length_ratio=1.096"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5UQI4|M5UQI4_9PLAN ;
ALN/Q_length_ratio=0.836 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like, Rhodopirellula baltica
OS=Rhodopirellula sallentina SM41 GN=RSSM_00336 PE=4 SV=1
; EVALUE=2e-14 ; Q/S_length_ratio=0.291"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L7CAW6|L7CAW6_RHOBT ;
ALN/Q_length_ratio=0.846 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_04814 PE=3 SV=1 ; EVALUE=2e-14 ;
Q/S_length_ratio=1.134"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K5D7K0|K5D7K0_RHOBT ;
ALN/Q_length_ratio=0.728 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica SH28 GN=RBSH_05821
PE=3 SV=1 ; EVALUE=3e-14 ; Q/S_length_ratio=1.266"
/note="Pfam_scan:hit_1 (33..101);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:2.2e-10; BITSCORE: 39.9"
/note="Pfam_scan:hit_2 (132..184);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:48; HMM_Length:54;
EVALUE:2e-08; BITSCORE: 33.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MEHDSEQTGP VTPEADRIVA EVLAGDTPAF AGLVRLYQES VWRIAAAVLR DRDATENLVQ
61 QVFVDAYFHL DQYAPGTDFG AWVRTVARNR LRKELRSAGR EDRRLAVYRE RLAERLRAEA
121 GSTNDDSESF VEALRGCREQ LPPRDAVLVN LRYEKGLTFE AIAEKQGQTP EAVQRMISRI
181 RFRLRDCIQN KLNDA
//