LOCUS VTR95588.1 195 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase sigma-70 ecf- rhodopirellula baltica : RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica OS=Rhodopirellula sallentina SM41 GN=RSSM_00487 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein. ACCESSION LR593886-4889 PROTEIN_ID VTR95588.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_21260" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|M5U9D5|M5U9D5_9PLAN ; ALN/Q_length_ratio=0.877 ; DESCRIPTION=RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica OS=Rhodopirellula sallentina SM41 GN=RSSM_00487 PE=4 SV=1 ; EVALUE=2e-18 ; Q/S_length_ratio=1.134" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|X0UJ41|X0UJ41_9ZZZZ ; ALN/Q_length_ratio=0.523 ; DESCRIPTION=Marine sediment metagenome DNA, contig: S01H1_S12130 (Fragment) OS=marine sediment metagenome GN=S01H1_42321 PE=4 SV=1 ; EVALUE=4e-18 ; Q/S_length_ratio=1.598" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|M5TC71|M5TC71_9PLAN ; ALN/Q_length_ratio=0.882 ; DESCRIPTION=RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica OS=Rhodopirellula sp. SWK7 GN=RRSWK_06153 PE=4 SV=1 ; EVALUE=6e-18 ; Q/S_length_ratio=1.114" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|A6DTI8|A6DTI8_9BACT ; ALN/Q_length_ratio=0.903 ; DESCRIPTION=Putative RNA polymerase sigma-W factor OS=Lentisphaera araneosa HTCC2155 GN=LNTAR_01737 PE=4 SV=1 ; EVALUE=2e-16 ; Q/S_length_ratio=1.083" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|F2AKA4|F2AKA4_RHOBT ; ALN/Q_length_ratio=0.903 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula baltica WH47 GN=RBWH47_03890 PE=4 SV=1 ; EVALUE=3e-16 ; Q/S_length_ratio=0.961" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|Q7ULE1|Q7ULE1_RHOBA ; ALN/Q_length_ratio=0.903 ; DESCRIPTION=Probable extracytoplasmic function alternative sigma factor OS=Rhodopirellula baltica (strain SH1) GN=sigE PE=4 SV=1 ; EVALUE=2e-15 ; Q/S_length_ratio=0.789" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|K5DDU2|K5DDU2_RHOBT ; ALN/Q_length_ratio=0.903 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula baltica SH28 GN=RBSH_04060 PE=4 SV=1 ; EVALUE=2e-15 ; Q/S_length_ratio=0.961" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|L7C5Y1|L7C5Y1_RHOBT ; ALN/Q_length_ratio=0.903 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula baltica SWK14 GN=RBSWK_06450 PE=4 SV=1 ; EVALUE=2e-15 ; Q/S_length_ratio=0.961" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|K6YP44|K6YP44_9ALTE ; ALN/Q_length_ratio=0.841 ; DESCRIPTION=Uncharacterized protein OS=Glaciecola lipolytica E3 GN=GLIP_0469 PE=4 SV=1 ; EVALUE=5e-15 ; Q/S_length_ratio=1.127" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|M2B194|M2B194_9PLAN ; ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodopirellula europaea 6C GN=RE6C_03321 PE=3 SV=1 ; EVALUE=6e-15 ; Q/S_length_ratio=1.032" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|F2AQW8|F2AQW8_RHOBT ; ALN/Q_length_ratio=0.846 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodopirellula baltica WH47 GN=RBWH47_00721 PE=3 SV=1 ; EVALUE=1e-14 ; Q/S_length_ratio=1.134" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|M5T5I1|M5T5I1_9PLAN ; ALN/Q_length_ratio=0.667 ; DESCRIPTION=RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica OS=Rhodopirellula sp. SWK7 GN=RRSWK_06772 PE=4 SV=1 ; EVALUE=2e-14 ; Q/S_length_ratio=1.096" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|M5UQI4|M5UQI4_9PLAN ; ALN/Q_length_ratio=0.836 ; DESCRIPTION=RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica OS=Rhodopirellula sallentina SM41 GN=RSSM_00336 PE=4 SV=1 ; EVALUE=2e-14 ; Q/S_length_ratio=0.291" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|L7CAW6|L7CAW6_RHOBT ; ALN/Q_length_ratio=0.846 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodopirellula baltica SWK14 GN=RBSWK_04814 PE=3 SV=1 ; EVALUE=2e-14 ; Q/S_length_ratio=1.134" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|K5D7K0|K5D7K0_RHOBT ; ALN/Q_length_ratio=0.728 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodopirellula baltica SH28 GN=RBSH_05821 PE=3 SV=1 ; EVALUE=3e-14 ; Q/S_length_ratio=1.266" /note="Pfam_scan:hit_1 (33..101); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71; EVALUE:2.2e-10; BITSCORE: 39.9" /note="Pfam_scan:hit_2 (132..184); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:48; HMM_Length:54; EVALUE:2e-08; BITSCORE: 33.5" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MEHDSEQTGP VTPEADRIVA EVLAGDTPAF AGLVRLYQES VWRIAAAVLR DRDATENLVQ 61 QVFVDAYFHL DQYAPGTDFG AWVRTVARNR LRKELRSAGR EDRRLAVYRE RLAERLRAEA 121 GSTNDDSESF VEALRGCREQ LPPRDAVLVN LRYEKGLTFE AIAEKQGQTP EAVQRMISRI 181 RFRLRDCIQN KLNDA //