LOCUS VTR95561.1 611 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana transcription termination factor rho
: Transcription termination factor Rho OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=rho PE=3 SV=1: Rho_N: Rho_RNA_bind: ATP-synt_ab
protein.
ACCESSION LR593886-4862
PROTEIN_ID VTR95561.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_21530"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|Q1PUV0|Q1PUV0_9BACT ;
ALN/Q_length_ratio=0.707 ; DESCRIPTION=Transcription
termination factor Rho OS=Candidatus Kuenenia
stuttgartiensis GN=rho PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.349"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|E8QZ11|E8QZ11_ISOPI ;
ALN/Q_length_ratio=0.722 ; DESCRIPTION=Transcription
termination factor Rho OS=Isosphaera pallida (strain ATCC
43644 / DSM 9630 / IS1B) GN=rho PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.924"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|B9M0K8|B9M0K8_GEODF ;
ALN/Q_length_ratio=0.674 ; DESCRIPTION=Transcription
termination factor Rho OS=Geobacter daltonii (strain DSM
22248 / JCM 15807 / FRC-32) GN=rho PE=3 SV=1 ; EVALUE=0.0
; Q/S_length_ratio=1.472"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SGU6|F0SGU6_PLABD ;
ALN/Q_length_ratio=0.715 ; DESCRIPTION=Transcription
termination factor Rho OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=rho PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.323"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A6CAX4|A6CAX4_9PLAN ;
ALN/Q_length_ratio=0.702 ; DESCRIPTION=Transcription
termination factor Rho OS=Planctomyces maris DSM 8797
GN=rho PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.281"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|B3E624|B3E624_GEOLS ;
ALN/Q_length_ratio=0.674 ; DESCRIPTION=Transcription
termination factor Rho OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=rho PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.472"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D2R072|D2R072_PIRSD ;
ALN/Q_length_ratio=0.709 ; DESCRIPTION=Transcription
termination factor Rho OS=Pirellula staleyi (strain ATCC
27377 / DSM 6068 / ICPB 4128) GN=rho PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.180"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|C6E7G7|C6E7G7_GEOSM ;
ALN/Q_length_ratio=0.674 ; DESCRIPTION=Transcription
termination factor Rho OS=Geobacter sp. (strain M21)
GN=rho PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.472"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A081C8X7|A0A081C8X7_9BACT ;
ALN/Q_length_ratio=0.686 ; DESCRIPTION=Transcription
termination factor Rho OS=bacterium UASB270 GN=rho PE=3
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.408"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|D5SVQ2|D5SVQ2_PLAL2 ;
ALN/Q_length_ratio=0.704 ; DESCRIPTION=Transcription
termination factor Rho OS=Planctomyces limnophilus (strain
ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=rho PE=3 SV=1
; EVALUE=0.0 ; Q/S_length_ratio=1.300"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|I3IJW5|I3IJW5_9PLAN ;
ALN/Q_length_ratio=0.705 ; DESCRIPTION=Transcription
termination factor Rho OS=planctomycete KSU-1 GN=rho PE=3
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.376"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|B5EDS7|B5EDS7_GEOBB ;
ALN/Q_length_ratio=0.674 ; DESCRIPTION=Transcription
termination factor Rho OS=Geobacter bemidjiensis (strain
Bem / ATCC BAA-1014 / DSM 16622) GN=rho PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.472"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|Q3A126|Q3A126_PELCD ;
ALN/Q_length_ratio=0.674 ; DESCRIPTION=Transcription
termination factor Rho OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=rho PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.472"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A3ZQQ2|A3ZQQ2_9PLAN ;
ALN/Q_length_ratio=0.712 ; DESCRIPTION=Transcription
termination factor Rho OS=Blastopirellula marina DSM 3645
GN=rho PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.189"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DJE7|L0DJE7_SINAD ;
ALN/Q_length_ratio=0.740 ; DESCRIPTION=Transcription
termination factor Rho OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=rho PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.950"
/note="Pfam_scan:hit_1 (195..239); Pfam:PF07498.7:Rho_N;
Pfam_type:Family;HMM_aln_Length:42; HMM_Length:43;
EVALUE:4e-09; BITSCORE: 36.0"
/note="Pfam_scan:hit_2 (241..318);
Pfam:PF07497.7:Rho_RNA_bind;
Pfam_type:Domain;HMM_aln_Length:76; HMM_Length:78;
EVALUE:1.8e-37; BITSCORE: 126.8"
/note="Pfam_scan:hit_3 (346..557);
Pfam:PF00006.20:ATP-synt_ab;
Pfam_type:Family;HMM_aln_Length:211; HMM_Length:215;
EVALUE:7.4e-43; BITSCORE: 146.5"
/note="GO_domain:GO:0016887"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="Enzyme_Code:EC:3.6.1"
/note="Enzyme_Code:EC:3.6.1.3"
/note="Enzyme_Code:EC:3.6.1.15"
BEGIN
1 MSDTKPEVTK PTRTPRSRAR KTAEPAAPPP PPAPVASEVA EDEGFAAGIV DEVPAKPEPA
61 PPVVTPPPAV IPPPPPAPEV RERRAEEVRE RRTESRESAR ADRGSRSERV PDPREAPRAE
121 TPLPAPRAEP PPPAPRAELS PPAPRVELPP PVLPPVAPPA VTPAPLRVDP HEQGFDAETN
181 SRYEEIKRGN TYITELQHMT IAQLQKAAKD EGIPREEYVG LKKQDLVYRI LRELTKANGL
241 MFGEGTLEVL PDGFGFLRSP DYNYLPCPDD IYISPSQIRR FGLRTGAVVA GQTRPPKENE
301 RYFALLRVEA INYAEPDLLT QKVVFDDLTP LHPERRLKLE TTPDELNTRV IDLITPIGKG
361 QRGLIVAPPR TGKTVLLQKM ANSIIQNHPE CYVIVLLIDE RPEEVTDMSR TVKGPRVEVV
421 SSTFDEPPER HVQVSEMVIE KAKRLVEYGT DVVILLDSIT RLARAYNTVS PGSGKLLSGG
481 LDATALYKPK RFFGAARNID EGGSLTILAT ALVDTGSKMD EVIFEEFKGT GNMEVHLERR
541 MVDRRVYPAI DVNASGTRKE ELLRGEDELR LVHIMHRILA DMNPVEAMEL LLKQLSKYKT
601 NAEFLTSVTL T
//