LOCUS VTR95516.1 201 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-70 ecf-like protein
: DNA-directed RNA polymerase specialized sigma subunit,
sigma24 OS=Singulisphaera acidiphila (strain ATCC BAA-
1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7395 PE=
4 SV=1: Sigma70_ECF protein.
ACCESSION LR593886-4817
PROTEIN_ID VTR95516.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_21980"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DPY7|L0DPY7_SINAD ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_7395 PE=4 SV=1 ;
EVALUE=6e-53 ; Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DJN8|L0DJN8_SINAD ;
ALN/Q_length_ratio=0.990 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_4904 PE=4 SV=1 ;
EVALUE=1e-50 ; Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0D9Z6|L0D9Z6_SINAD ;
ALN/Q_length_ratio=1.030 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_1052 PE=4 SV=1 ;
EVALUE=1e-45 ; Q/S_length_ratio=0.953"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5U7U6|M5U7U6_9PLAN ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_01032 PE=4 SV=1 ; EVALUE=4e-44 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5T897|M5T897_9PLAN ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_02117 PE=4 SV=1 ; EVALUE=3e-43 ;
Q/S_length_ratio=0.863"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F0SMJ3|F0SMJ3_PLABD ;
ALN/Q_length_ratio=0.990 ; DESCRIPTION=Uncharacterized
protein OS=Planctomyces brasiliensis (strain ATCC 49424 /
DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_0125 PE=4 SV=1 ; EVALUE=6e-43 ;
Q/S_length_ratio=0.885"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5U100|M5U100_9PLAN ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_03451 PE=4 SV=1 ; EVALUE=6e-38 ;
Q/S_length_ratio=0.807"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|F2ATN4|F2ATN4_RHOBT ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_03907 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.914"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5SVC9|M5SVC9_9PLAN ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_06786 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.801"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7UGA3|Q7UGA3_RHOBA ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=Putative
uncharacterized protein OS=Rhodopirellula baltica (strain
SH1) GN=RB8027 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.866"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|K5E2B9|K5E2B9_RHOBT ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula baltica SH28
GN=RBSH_04631 PE=4 SV=1 ; EVALUE=5e-37 ;
Q/S_length_ratio=0.914"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L7CDC2|L7CDC2_RHOBT ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula baltica SWK14
GN=RBSWK_04430 PE=4 SV=1 ; EVALUE=5e-37 ;
Q/S_length_ratio=0.939"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M2AUF9|M2AUF9_9PLAN ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula europaea 6C
GN=RE6C_05647 PE=4 SV=1 ; EVALUE=7e-36 ;
Q/S_length_ratio=0.918"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5SEH2|M5SEH2_9PLAN ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula europaea SH398
GN=RESH_03429 PE=4 SV=1 ; EVALUE=6e-35 ;
Q/S_length_ratio=0.918"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5RWF3|M5RWF3_9PLAN ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula maiorica SM1
GN=RMSM_03346 PE=4 SV=1 ; EVALUE=8e-35 ;
Q/S_length_ratio=0.848"
/note="Pfam_scan:hit_1 (4..200);
Pfam:PF07638.6:Sigma70_ECF;
Pfam_type:Family;HMM_aln_Length:179; HMM_Length:185;
EVALUE:3.3e-39; BITSCORE: 134.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSAEGSITRF LGPLRAGDEG AVQKLWEAYY ERLVSLARKK LGSAPRRAAD EEDAALSAFD
61 NFCRGAVEGR FPRLLDRDDL WQILLVLTVR KTANLLKREN ALKRGGRAQP IALSAGNANG
121 DDTVLAELID REPEPGVVVE VAEECRRLLA KLDDPELRAV AVWKMEGHTN EEIAVKLGRS
181 LGSVERKLRV IRTLWGQELP P
//