LOCUS VTR95479.1 349 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana ribosomal large subunit pseudouridine
synthase : Pseudouridine synthase OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4872 PE=3 SV=1: S4: PseudoU_synth_2 protein.
ACCESSION LR593886-4780
PROTEIN_ID VTR95479.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_22350"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DK55|L0DK55_SINAD ;
ALN/Q_length_ratio=0.917 ; DESCRIPTION=Pseudouridine
synthase OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4872
PE=3 SV=1 ; EVALUE=1e-110 ; Q/S_length_ratio=1.039"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A6C0W7|A6C0W7_9PLAN ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=Pseudouridine
synthase OS=Planctomyces maris DSM 8797 GN=PM8797T_05295
PE=3 SV=1 ; EVALUE=1e-104 ; Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D5SWB8|D5SWB8_PLAL2 ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=Pseudouridine
synthase OS=Planctomyces limnophilus (strain ATCC 43296 /
DSM 3776 / IFAM 1008 / 290) GN=Plim_3699 PE=3 SV=1 ;
EVALUE=1e-101 ; Q/S_length_ratio=1.012"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|E8QY33|E8QY33_ISOPI ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=Pseudouridine
synthase OS=Isosphaera pallida (strain ATCC 43644 / DSM
9630 / IS1B) GN=Isop_1438 PE=3 SV=1 ; EVALUE=2e-98 ;
Q/S_length_ratio=0.808"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|D2R7T3|D2R7T3_PIRSD ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=Pseudouridine
synthase OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_2843 PE=3 SV=1 ; EVALUE=9e-94 ;
Q/S_length_ratio=0.983"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F0SHU7|F0SHU7_PLABD ;
ALN/Q_length_ratio=0.914 ; DESCRIPTION=Pseudouridine
synthase OS=Planctomyces brasiliensis (strain ATCC 49424 /
DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_1973 PE=3 SV=1 ; EVALUE=6e-91 ;
Q/S_length_ratio=1.039"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5S695|M5S695_9PLAN ;
ALN/Q_length_ratio=0.900 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula maiorica SM1 GN=RMSM_01354 PE=3
SV=1 ; EVALUE=6e-90 ; Q/S_length_ratio=0.954"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L7CIW9|L7CIW9_RHOBT ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula baltica SWK14 GN=RBSWK_02267
PE=3 SV=1 ; EVALUE=4e-88 ; Q/S_length_ratio=1.048"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K5DHI6|K5DHI6_RHOBT ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula baltica SH28 GN=RBSH_02403 PE=3
SV=1 ; EVALUE=4e-88 ; Q/S_length_ratio=1.048"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|Q7UHX8|Q7UHX8_RHOBA ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula baltica (strain SH1) GN=rluD
PE=3 SV=1 ; EVALUE=4e-88 ; Q/S_length_ratio=1.045"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|F2AVK9|F2AVK9_RHOBT ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula baltica WH47 GN=RBWH47_02268
PE=3 SV=1 ; EVALUE=4e-88 ; Q/S_length_ratio=1.048"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5SBC9|M5SBC9_9PLAN ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula europaea SH398 GN=RESH_00689
PE=3 SV=1 ; EVALUE=6e-88 ; Q/S_length_ratio=1.045"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M2AM93|M2AM93_9PLAN ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula europaea 6C GN=RE6C_01013 PE=3
SV=1 ; EVALUE=1e-87 ; Q/S_length_ratio=1.045"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|T0L4Z2|T0L4Z2_9BACT ;
ALN/Q_length_ratio=0.908 ; DESCRIPTION=Pseudouridine
synthase OS=candidate division ZIXI bacterium RBG-1
GN=RBG1_1C00001G0106 PE=3 SV=1 ; EVALUE=1e-84 ;
Q/S_length_ratio=1.077"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|U5CPV8|U5CPV8_THEYO ;
ALN/Q_length_ratio=0.834 ; DESCRIPTION=Pseudouridine
synthase OS=Caldanaerobacter subterraneus subsp.
yonseiensis KB-1 GN=O163_12905 PE=3 SV=1 ; EVALUE=6e-84 ;
Q/S_length_ratio=1.129"
/note="Pfam_scan:hit_1 (37..85); Pfam:PF01479.20:S4;
Pfam_type:Domain;HMM_aln_Length:46; HMM_Length:48;
EVALUE:2.8e-12; BITSCORE: 45.8"
/note="Pfam_scan:hit_2 (112..269);
Pfam:PF00849.17:PseudoU_synth_2;
Pfam_type:Family;HMM_aln_Length:160; HMM_Length:164;
EVALUE:4.4e-32; BITSCORE: 111.1"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0016853"
/note="Enzyme_Code:EC:5.4.99.12"
BEGIN
1 MSDELEDDLI PEPAPVTSSV RFREPLDLLV MVKSEGMRLD QYVLLHLGAD FSRSVVQRAI
61 EAGGVTLNGK PITKPSYKVR KHDRLHVAMP EPTHEIPVPE DIPLDILYQD EWLAIVNKPS
121 DMVVHPAKGN WSGTLVNALQ WHFREHLSTG AGHLRAGIVH RLDKDTSGVI LVAKDDMTHR
181 DLAMQFESRK VFKEYVAIAA GELERDSDYI EGALKMHPYD RLKMIVSTDP DAKHALSYYE
241 VLERFRGFTL VKVQPRTGRT HQIRVHLLHV GCAVLADKIY GGRSQVKLSE LAPNQPSTED
301 EVLLARQALH AFRLRFQHPR TGQWIEAEAP LPPDMRRVLD ALRAHRALK
//