LOCUS VTR95216.1 203 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor y : RNA
polymerase sigma factor, sigma-70 family OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_1616 PE=4 SV=1: Sigma70_r2 protein.
ACCESSION LR593886-4517
PROTEIN_ID VTR95216.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_24980"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DAW4|L0DAW4_SINAD ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1616 PE=4 SV=1 ; EVALUE=3e-65 ;
Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5SU82|M5SU82_9PLAN ;
ALN/Q_length_ratio=0.897 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula sp. SWK7 GN=RRSWK_07091
PE=4 SV=1 ; EVALUE=1e-40 ; Q/S_length_ratio=1.103"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DKJ5|L0DKJ5_SINAD ;
ALN/Q_length_ratio=0.931 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5656 PE=4 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=0.940"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|H5SIK4|H5SIK4_9BACT ;
ALN/Q_length_ratio=0.961 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=uncultured planctomycete
GN=HGMM_F33C03C33 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.967"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|K5D9M4|K5D9M4_RHOBT ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula baltica SH28
GN=RBSH_01246 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|Q7ULK6|Q7ULK6_RHOBA ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=Probable RNA
polymerase sigma factor Y OS=Rhodopirellula baltica
(strain SH1) GN=sigY PE=4 SV=1 ; EVALUE=5e-37 ;
Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F2AK44|F2AK44_RHOBT ;
ALN/Q_length_ratio=0.961 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula baltica WH47
GN=RBWH47_03830 PE=4 SV=1 ; EVALUE=5e-37 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M2ALH1|M2ALH1_9PLAN ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
europaea 6C GN=RE6C_05745 PE=4 SV=1 ; EVALUE=6e-37 ;
Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L7CMG6|L7CMG6_RHOBT ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SWK14 GN=RBSWK_01838 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M2ATB8|M2ATB8_9PLAN ;
ALN/Q_length_ratio=0.936 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula europaea 6C GN=RE6C_05964
PE=4 SV=1 ; EVALUE=2e-36 ; Q/S_length_ratio=1.046"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5S4M0|M5S4M0_9PLAN ;
ALN/Q_length_ratio=0.961 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula europaea SH398
GN=RESH_02838 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|F2AR27|F2AR27_RHOBT ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula baltica WH47
GN=RBWH47_01148 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|K5D0M6|K5D0M6_RHOBT ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=Protein containing
RNA polymerase sigma-70 domain protein OS=Rhodopirellula
baltica SH28 GN=RBSH_04739 PE=4 SV=1 ; EVALUE=9e-36 ;
Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5S5S2|M5S5S2_9PLAN ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula europaea
SH398 GN=RESH_02679 PE=4 SV=1 ; EVALUE=9e-36 ;
Q/S_length_ratio=0.958"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5T7M6|M5T7M6_9PLAN ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_02221 PE=4 SV=1 ; EVALUE=4e-35 ;
Q/S_length_ratio=1.025"
/note="Pfam_scan:hit_1 (33..104);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:3.1e-11; BITSCORE: 42.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPRPDDQPAD RASTSLTLLQ RARAREPGAW DRLWALYGPL VTHWCATARV RPADVEDVRQ
61 EVFLSVARAL GEFRRDRAGD TFRGWLRTIT RNVLSTHFRR GARQPVGAGG SEAQARLHEL
121 ADPNVELPDE DPPGEVRGVY RRALELVRGE FEEHTWQMFW QNVVEERDAA AVAEQFGVST
181 AAVRKARSRV LRRLKEEVGD AIE
//