LOCUS VTR95098.1 512 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_7079 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-4399
PROTEIN_ID VTR95098.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_26160"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=0.537"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.816 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=3e-38 ;
Q/S_length_ratio=0.465"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.434 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=9e-37 ;
Q/S_length_ratio=1.605"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.588 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=0.834"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.615 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.729"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=8e-36 ;
Q/S_length_ratio=0.534"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DE85|L0DE85_SINAD ;
ALN/Q_length_ratio=0.578 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3292 PE=4 SV=1 ; EVALUE=8e-33 ;
Q/S_length_ratio=0.977"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DHB1|L0DHB1_SINAD ;
ALN/Q_length_ratio=0.994 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4458 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=0.526"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.578 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=3e-31 ;
Q/S_length_ratio=0.914"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.553 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=6e-31 ;
Q/S_length_ratio=0.858"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=1.033 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=3e-30 ;
Q/S_length_ratio=0.523"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DQ81|L0DQ81_SINAD ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7511 PE=4 SV=1 ; EVALUE=4e-30 ;
Q/S_length_ratio=0.593"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DI62|L0DI62_SINAD ;
ALN/Q_length_ratio=1.021 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4348 PE=4 SV=1 ; EVALUE=6e-30 ;
Q/S_length_ratio=0.510"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.385 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=1e-29 ;
Q/S_length_ratio=0.417"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.354 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-29 ;
Q/S_length_ratio=0.442"
/note="Pfam_scan:hit_1 (40..109);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:62; HMM_Length:71;
EVALUE:8.8e-07; BITSCORE: 28.4"
/note="Pfam_scan:hit_2 (135..188);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1.8e-07; BITSCORE: 30.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSQHALTQIV RKSGELVDEI DAQLIARFVS TRDEAAFRVL VQRHGPVVLA ALRQVLADPA
61 GIDDSFQATF LVLFKRATRS APLSVPLRGW LFGVAHRVAV RCRADRHRCT VRETEAARRA
121 RPTTELPDLS WREATEILHQ ELNALPDKYR LPLLLCGVQG LTRDEAADQL GATAGALRGH
181 LDRGLALLEK RLTRRGIVLS AGWLALVIDS SRAVEVPPAR LIDLAARVAS GQCTRAVIAL
241 AAGVLPVNKL LKPFALTVTA LLIVAGIGFG FVPTAPQVDE KPVPKAAASA PRAETTAPEP
301 APKEDTKELR TITGKVLDAT GKPVPAELSL MWFTGPPQPL GRAGADGAFA LTVPFKRNGS
361 GGRFVAKAPG HGMDFRPHGL SSVPESMSPT ADWTLKLPKE RAIRGRVLDH EGTAVAGATV
421 VANFFSACDT EAAVDRRLEE WAAREYHGTP PSGDRTLWFP DADWTLGSPD ERSPYTATTD
481 KDGRFEIAGT GVNQLVGLRI RVRALRTRNS SP
//