LOCUS VTR94983.1 626 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_1558 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-4284
PROTEIN_ID VTR94983.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_27310"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D9N2|L0D9N2_SINAD ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1558 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=0.697"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.353 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=4e-36 ;
Q/S_length_ratio=1.476"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.289 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=1.420"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.296 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=1.962"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.289 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=1.299"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.252 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=1.247"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.324 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=1.257"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.318 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=3e-32 ;
Q/S_length_ratio=0.701"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.447 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=4e-32 ;
Q/S_length_ratio=1.250"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.372 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=6e-32 ;
Q/S_length_ratio=1.049"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.444 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=8e-32 ;
Q/S_length_ratio=0.892"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.292 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=5e-31 ;
Q/S_length_ratio=1.118"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.375 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=9e-31 ;
Q/S_length_ratio=1.094"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.395 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-30 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.262 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=2e-29 ;
Q/S_length_ratio=0.653"
/note="Pfam_scan:hit_1 (42..110);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:3.4e-10; BITSCORE: 39.3"
/note="Pfam_scan:hit_2 (135..188);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:48; HMM_Length:54;
EVALUE:9.6e-11; BITSCORE: 40.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPQTVCTAAV NRALRAVHRP TSDGELVERF AATGDSDAFS QLVHRHGAMV LAVCRRITRH
61 HQDAEDAFQA TFLVLARRAG AVNTSRAVAG WLFGVAVNAA REARRRSARR YNRESLTATP
121 PETGRCEPDP DFDIRAVVAE ELAGLPEGYR SLVVACDLQG ESQAAVARRL GLPVGTVYSR
181 LSTARRILAE RLGRRGLGAP ACLVALAAFA ADVEALPPVS DCPSPHVTEL TEAIMRRGFA
241 VRWKLAACAL LASVAVALSG EPPKEKPIVA PAPTAAEESR LILGLGGHVR YLKSDGTEVS
301 RLTGAEVVKA GADMPTRSLS VGLNSDVGLT TTVSEIFGPS GRIAPDGRLP LNTRKGLYML
361 TPGDSLVVKP AKAAAGEGAL FASGNVPYIV AWSPDAKKAI GFRIKRGLFG SVYEHVLIDL
421 AAGTTSELKV PSMHRVVDWS PDGSWFLTIR ENKTWGLEGL YARERVLCKV SADGKTSRAL
481 TPTGGNGPGQ SVVVESAVLS PDGTRVAYQQ WTTTLAQQAK EGPVYCQGLD VVVLDLDRGT
541 RTVVASEPGG KGSGDFLQMN TSFGVRWSPD GSRVGFLYEH REFGTPFIVA WRVGVVNTSG
601 GKVKTVFASD KVDKTPPTAL TTFDWR
//