LOCUS VTR94947.1 236 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase
sigma factor OS=Blastopirellula marina DSM 3645 GN=DSM3645_09692
PE=3 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-4248
PROTEIN_ID VTR94947.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_27670"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A3ZLM9|A3ZLM9_9PLAN ;
ALN/Q_length_ratio=0.797 ; DESCRIPTION=RNA polymerase
sigma factor OS=Blastopirellula marina DSM 3645
GN=DSM3645_09692 PE=3 SV=1 ; EVALUE=2e-50 ;
Q/S_length_ratio=1.242"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DMU7|L0DMU7_SINAD ;
ALN/Q_length_ratio=0.763 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5873 PE=4 SV=1 ; EVALUE=3e-45 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8R1K2|E8R1K2_ISOPI ;
ALN/Q_length_ratio=0.780 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_2854 PE=4
SV=1 ; EVALUE=3e-43 ; Q/S_length_ratio=0.940"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5T4U0|M5T4U0_9PLAN ;
ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_06910
PE=3 SV=1 ; EVALUE=1e-41 ; Q/S_length_ratio=1.151"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|D2R1D3|D2R1D3_PIRSD ;
ALN/Q_length_ratio=0.746 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_0222 PE=3 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=1.249"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F0SHB4|F0SHB4_PLABD ;
ALN/Q_length_ratio=0.742 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_4092 PE=4 SV=1 ;
EVALUE=4e-40 ; Q/S_length_ratio=1.210"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A6C5N0|A6C5N0_9PLAN ;
ALN/Q_length_ratio=0.771 ; DESCRIPTION=RNA polymerase
sigma factor RpoE OS=Planctomyces maris DSM 8797
GN=PM8797T_18574 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=1.140"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5U4L4|M5U4L4_9PLAN ;
ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sallentina SM41
GN=RSSM_02351 PE=3 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=1.088"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|D5SNG4|D5SNG4_PLAL2 ;
ALN/Q_length_ratio=0.737 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_2252 PE=4 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=1.223"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|S0EYU5|S0EYU5_CHTCT ;
ALN/Q_length_ratio=0.792 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Chthonomonas calidirosea
(strain DSM 23976 / ICMP 18418 / T49) GN=CCALI_01897 PE=4
SV=1 ; EVALUE=3e-38 ; Q/S_length_ratio=1.210"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|B9MHJ0|B9MHJ0_ACIET ;
ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Acidovorax ebreus
(strain TPSY) GN=Dtpsy_1433 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=1.283"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A1W8K1|A1W8K1_ACISJ ;
ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase,
sigma subunit, ECF family OS=Acidovorax sp. (strain JS42)
GN=Ajs_2415 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=1.063"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|R5AWX5|R5AWX5_9FIRM ;
ALN/Q_length_ratio=0.780 ; DESCRIPTION=Sigma-70 family RNA
polymerase sigma factor OS=Firmicutes bacterium CAG:103
GN=BN455_00512 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=1.140"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|D9QQ52|D9QQ52_ACEAZ ;
ALN/Q_length_ratio=0.763 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Acetohalobium
arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288)
GN=Acear_1121 PE=4 SV=1 ; EVALUE=6e-36 ;
Q/S_length_ratio=1.229"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q21XN8|Q21XN8_RHOFT ;
ALN/Q_length_ratio=0.818 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodoferax ferrireducens (strain ATCC
BAA-621 / DSM 15236 / T118) GN=Rfer_1736 PE=3 SV=1 ;
EVALUE=2e-35 ; Q/S_length_ratio=1.098"
/note="Pfam_scan:hit_1 (23..91);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:7.8e-15; BITSCORE: 54.2"
/note="Pfam_scan:hit_2 (124..177);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:1.1e-17; BITSCORE: 63.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSDDDRRLIA DCLAGQWDAF GELVSQYQAR LYNSALRLVL SPEDAADVVQ DTFLSAYQAL
61 HTFKGDAEFF TWLYRIAFNT AISLKRKKKP SVSLESHTRE TGLDPNDPSE YVKPSAAIER
121 TEDERQLSDA IARLSTEHRD VLVLKDLEGM KYEEIAEVLG VPIGTIRSRL HRARLELRDL
181 LVPPNERAAL EGAEHDNRGE FRVEDVNTPR PSDTGRNAGS EEKEPPTQSR STRRSD
//