LOCUS VTR94947.1 236 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase sigma factor OS=Blastopirellula marina DSM 3645 GN=DSM3645_09692 PE=3 SV=1: Sigma70_r2: Sigma70_r4_2 protein. ACCESSION LR593886-4248 PROTEIN_ID VTR94947.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_27670" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|A3ZLM9|A3ZLM9_9PLAN ; ALN/Q_length_ratio=0.797 ; DESCRIPTION=RNA polymerase sigma factor OS=Blastopirellula marina DSM 3645 GN=DSM3645_09692 PE=3 SV=1 ; EVALUE=2e-50 ; Q/S_length_ratio=1.242" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|L0DMU7|L0DMU7_SINAD ; ALN/Q_length_ratio=0.763 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5873 PE=4 SV=1 ; EVALUE=3e-45 ; Q/S_length_ratio=1.174" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|E8R1K2|E8R1K2_ISOPI ; ALN/Q_length_ratio=0.780 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_2854 PE=4 SV=1 ; EVALUE=3e-43 ; Q/S_length_ratio=0.940" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|M5T4U0|M5T4U0_9PLAN ; ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_06910 PE=3 SV=1 ; EVALUE=1e-41 ; Q/S_length_ratio=1.151" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|D2R1D3|D2R1D3_PIRSD ; ALN/Q_length_ratio=0.746 ; DESCRIPTION=RNA polymerase sigma factor OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_0222 PE=3 SV=1 ; EVALUE=2e-41 ; Q/S_length_ratio=1.249" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|F0SHB4|F0SHB4_PLABD ; ALN/Q_length_ratio=0.742 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=Plabr_4092 PE=4 SV=1 ; EVALUE=4e-40 ; Q/S_length_ratio=1.210" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|A6C5N0|A6C5N0_9PLAN ; ALN/Q_length_ratio=0.771 ; DESCRIPTION=RNA polymerase sigma factor RpoE OS=Planctomyces maris DSM 8797 GN=PM8797T_18574 PE=4 SV=1 ; EVALUE=2e-39 ; Q/S_length_ratio=1.140" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|M5U4L4|M5U4L4_9PLAN ; ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodopirellula sallentina SM41 GN=RSSM_02351 PE=3 SV=1 ; EVALUE=2e-38 ; Q/S_length_ratio=1.088" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|D5SNG4|D5SNG4_PLAL2 ; ALN/Q_length_ratio=0.737 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_2252 PE=4 SV=1 ; EVALUE=2e-38 ; Q/S_length_ratio=1.223" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|S0EYU5|S0EYU5_CHTCT ; ALN/Q_length_ratio=0.792 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49) GN=CCALI_01897 PE=4 SV=1 ; EVALUE=3e-38 ; Q/S_length_ratio=1.210" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|B9MHJ0|B9MHJ0_ACIET ; ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Acidovorax ebreus (strain TPSY) GN=Dtpsy_1433 PE=4 SV=1 ; EVALUE=3e-37 ; Q/S_length_ratio=1.283" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|A1W8K1|A1W8K1_ACISJ ; ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase, sigma subunit, ECF family OS=Acidovorax sp. (strain JS42) GN=Ajs_2415 PE=4 SV=1 ; EVALUE=1e-36 ; Q/S_length_ratio=1.063" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|R5AWX5|R5AWX5_9FIRM ; ALN/Q_length_ratio=0.780 ; DESCRIPTION=Sigma-70 family RNA polymerase sigma factor OS=Firmicutes bacterium CAG:103 GN=BN455_00512 PE=4 SV=1 ; EVALUE=3e-36 ; Q/S_length_ratio=1.140" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|D9QQ52|D9QQ52_ACEAZ ; ALN/Q_length_ratio=0.763 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) GN=Acear_1121 PE=4 SV=1 ; EVALUE=6e-36 ; Q/S_length_ratio=1.229" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|Q21XN8|Q21XN8_RHOFT ; ALN/Q_length_ratio=0.818 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) GN=Rfer_1736 PE=3 SV=1 ; EVALUE=2e-35 ; Q/S_length_ratio=1.098" /note="Pfam_scan:hit_1 (23..91); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71; EVALUE:7.8e-15; BITSCORE: 54.2" /note="Pfam_scan:hit_2 (124..177); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54; EVALUE:1.1e-17; BITSCORE: 63.2" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MSDDDRRLIA DCLAGQWDAF GELVSQYQAR LYNSALRLVL SPEDAADVVQ DTFLSAYQAL 61 HTFKGDAEFF TWLYRIAFNT AISLKRKKKP SVSLESHTRE TGLDPNDPSE YVKPSAAIER 121 TEDERQLSDA IARLSTEHRD VLVLKDLEGM KYEEIAEVLG VPIGTIRSRL HRARLELRDL 181 LVPPNERAAL EGAEHDNRGE FRVEDVNTPR PSDTGRNAGS EEKEPPTQSR STRRSD //