LOCUS VTR94852.1 375 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana ribosomal large subunit pseudouridine
synthase d : Pseudouridine synthase OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_0906
PE=3 SV=1: PseudoU_synth_2 protein.
ACCESSION LR593886-4153
PROTEIN_ID VTR94852.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_28620"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D2R795|D2R795_PIRSD ;
ALN/Q_length_ratio=0.712 ; DESCRIPTION=Pseudouridine
synthase OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_0906 PE=3 SV=1 ; EVALUE=4e-61 ;
Q/S_length_ratio=1.100"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|B5JHH9|B5JHH9_9BACT ;
ALN/Q_length_ratio=0.797 ; DESCRIPTION=Pseudouridine
synthase OS=Verrucomicrobiae bacterium DG1235
GN=VDG1235_3973 PE=3 SV=1 ; EVALUE=1e-55 ;
Q/S_length_ratio=1.157"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D0LGK2|D0LGK2_HALO1 ;
ALN/Q_length_ratio=0.781 ; DESCRIPTION=Pseudouridine
synthase, RluA family OS=Haliangium ochraceum (strain DSM
14365 / JCM 11303 / SMP-2) GN=Hoch_0107 PE=4 SV=1 ;
EVALUE=6e-52 ; Q/S_length_ratio=1.234"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0A017T8K6|A0A017T8K6_9DELT ;
ALN/Q_length_ratio=0.813 ; DESCRIPTION=Pseudouridine
synthase OS=Chondromyces apiculatus DSM 436 GN=CAP_3121
PE=3 SV=1 ; EVALUE=6e-49 ; Q/S_length_ratio=1.008"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A9GHW4|A9GHW4_SORC5 ;
ALN/Q_length_ratio=0.645 ; DESCRIPTION=Pseudouridine
synthase OS=Sorangium cellulosum (strain So ce56) GN=rluD1
PE=3 SV=1 ; EVALUE=2e-48 ; Q/S_length_ratio=1.053"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|S4XIR3|S4XIR3_SORCE ;
ALN/Q_length_ratio=0.651 ; DESCRIPTION=Pseudouridine
synthase OS=Sorangium cellulosum So0157-2 GN=SCE1572_00050
PE=3 SV=1 ; EVALUE=4e-45 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A6G5N3|A6G5N3_9DELT ;
ALN/Q_length_ratio=0.805 ; DESCRIPTION=Pseudouridine
synthase OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_32487
PE=3 SV=1 ; EVALUE=1e-39 ; Q/S_length_ratio=1.165"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|T0DQ00|T0DQ00_9BACL ;
ALN/Q_length_ratio=0.693 ; DESCRIPTION=Pseudouridine
synthase OS=Alicyclobacillus acidoterrestris ATCC 49025
GN=N007_02950 PE=3 SV=1 ; EVALUE=6e-39 ;
Q/S_length_ratio=1.198"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|H8FZF5|H8FZF5_PEDPE ;
ALN/Q_length_ratio=0.592 ; DESCRIPTION=Pseudouridine
synthase OS=Pediococcus pentosaceus IE-3 GN=rluD PE=3 SV=1
; EVALUE=1e-38 ; Q/S_length_ratio=1.276"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q03FM4|Q03FM4_PEDPA ;
ALN/Q_length_ratio=0.592 ; DESCRIPTION=Pseudouridine
synthase OS=Pediococcus pentosaceus (strain ATCC 25745 /
183-1w) GN=PEPE_0941 PE=3 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=1.250"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|U5ZJG6|U5ZJG6_PEDPE ;
ALN/Q_length_ratio=0.592 ; DESCRIPTION=Pseudouridine
synthase OS=Pediococcus pentosaceus SL4 GN=T256_04600 PE=3
SV=1 ; EVALUE=2e-38 ; Q/S_length_ratio=1.250"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|R0GK74|R0GK74_PEDAC ;
ALN/Q_length_ratio=0.595 ; DESCRIPTION=Pseudouridine
synthase OS=Pediococcus acidilactici D3 GN=PAD3_0400 PE=3
SV=1 ; EVALUE=4e-38 ; Q/S_length_ratio=1.242"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0D6L9|L0D6L9_SINAD ;
ALN/Q_length_ratio=0.600 ; DESCRIPTION=Pseudouridine
synthase, RluA family OS=Singulisphaera acidiphila (strain
ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0639 PE=4 SV=1 ; EVALUE=4e-38 ;
Q/S_length_ratio=1.246"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|W7S8H9|W7S8H9_LYSSH ;
ALN/Q_length_ratio=0.667 ; DESCRIPTION=Pseudouridine
synthase OS=Lysinibacillus sphaericus CBAM5 GN=P799_02995
PE=3 SV=1 ; EVALUE=4e-38 ; Q/S_length_ratio=1.238"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|B1HQB5|B1HQB5_LYSSC ;
ALN/Q_length_ratio=0.667 ; DESCRIPTION=Pseudouridine
synthase OS=Lysinibacillus sphaericus (strain C3-41)
GN=Bsph_1458 PE=3 SV=1 ; EVALUE=4e-38 ;
Q/S_length_ratio=1.238"
/note="Pfam_scan:hit_1 (145..307);
Pfam:PF00849.17:PseudoU_synth_2;
Pfam_type:Family;HMM_aln_Length:160; HMM_Length:164;
EVALUE:4.4e-30; BITSCORE: 104.6"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0016853"
/note="Enzyme_Code:EC:5.4.99.12"
BEGIN
1 MPPIQFVVDR REAGQTLAAV LKLRFGIPWA RAKRLVEGQH VKVSGQVETD VARRLKLGKR
61 VELATGTVEM KKTSGGKDSK KPEQQKGTVT GNKGKPGEKR PQVPAPRKTA KTAPKAPERR
121 GDRVPPAHPL APSLELDAIV YVDDAVVVVN KPVGLTTMRH KDEADEFGEH GQRFLTKTLA
181 GMLPGLLGAP DRPVTAVHRL DRDTSGLVVF ARTSAAAENL TKQFRKHTTE RRYLALTRGV
241 PKAARIASVL VRDRGDGRRG STTDLIAEDG KRAVTHVSVS ESWGDFALVG CRLETGRTHQ
301 ARIHLGEAGA PLCGETVYDR PINGKPRPDG SGAKRPMLHA TRLGFTHPDT GENVVWEVAP
361 PRDFGDLLIK LRAGR
//