LOCUS VTR94804.1 713 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: HlyD_2 protein.
ACCESSION LR593886-4105
PROTEIN_ID VTR94804.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_29100"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.379 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=1e-52 ;
Q/S_length_ratio=1.161"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.373 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-49 ;
Q/S_length_ratio=1.682"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.372 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=8e-49 ;
Q/S_length_ratio=1.273"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0D7F3|L0D7F3_SINAD ;
ALN/Q_length_ratio=0.626 ; DESCRIPTION=RND family efflux
transporter, MFP subunit OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0100 PE=4 SV=1 ; EVALUE=3e-48 ;
Q/S_length_ratio=1.473"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.415 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-47 ;
Q/S_length_ratio=1.423"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.414 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=7e-47 ;
Q/S_length_ratio=0.798"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.404 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=5e-45 ;
Q/S_length_ratio=2.235"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.411 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-43 ;
Q/S_length_ratio=1.194"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.380 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=9e-42 ;
Q/S_length_ratio=0.647"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.349 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=1e-41 ;
Q/S_length_ratio=1.479"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.352 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=6e-41 ;
Q/S_length_ratio=1.617"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.376 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=9e-41 ;
Q/S_length_ratio=1.602"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.439 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.407 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=0.615"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.365 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=0.581"
/note="Pfam_scan:hit_1 (41..112);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71;
EVALUE:1.3e-10; BITSCORE: 40.6"
/note="Pfam_scan:hit_2 (133..186);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:2.4e-12; BITSCORE: 46.0"
/note="Pfam_scan:hit_3 (313..691); Pfam:PF12700.2:HlyD_2;
Pfam_type:Family;HMM_aln_Length:324; HMM_Length:328;
EVALUE:3.7e-29; BITSCORE: 101.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0055085"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MNHGPRRLPR IPSLSSTGPP IDADLLARFI STGDEVAFEL LVRRHAPMVL AVCRRVLADP
61 NDADDAFQAA FLVLARKAAS VARAEVLAGW LYRIAYRAAV RVRSDRLRRA THADASPDLL
121 PAPTTDPNAR ELERVLDEEV AKLPERHRVA FVLCCLEGKT GEEAGRLIGC PPGTVSSRLT
181 RARERLRERL TRRGFAPALI VTVLSACAES AAAVSALTAL IDSTVHAAPG FATRRPTAAL
241 TARPATIAEG VIRTMNATKL KTLALLFALG LLAVGGVFAA PNASPEEEPN QPPKAKVGGA
301 QKAPAAPVVR VVQPQRGGLD RVSRNAGHAE PLQQADLFAT IAGTLKRVNV NLGDHVKRGQ
361 LLAEIDAPAL VLEERRAQID IEQAKSLLHE AEARLIAAKA EINTAKLTVK QRETEEAGAK
421 ATHVLWRKKH DQIVKISGAG TSDASDAELH LRTAETQLEG ATVAIESAKS DVAVKQSKLL
481 QTEANVGNAK TTIEAANLAL QKARLALEQA KIEAPFDGVV TRQNASAGDH VRPTERDTDR
541 ALFTLTRVDR VRFVTAVPES EVAHATVGAS AVVTFASRPG VRINEKISRI GFAIEKNGRM
601 RVEVDVPAAT NDIRPGMFGE VTLTLGKGPA DALRVPLSAI TEGPKERPGG SHGVYVYRDG
661 KARLTFVKVS QHNEKEVEIA SGLTADDLVV VDPKGLKSQP EVAVEVERPA PPK
//