LOCUS VTR94005.1 203 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncharacterized protein OS=Blastopirellula marina
DSM 3645 GN=DSM3645_26594 PE=4 SV=1: Sigma70_r4_2 protein.
ACCESSION LR593886-3306
PROTEIN_ID VTR94005.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_37090"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A3ZY49|A3ZY49_9PLAN ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_26594 PE=4 SV=1 ; EVALUE=2e-78 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGW7|L0DGW7_SINAD ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4435 PE=4 SV=1 ; EVALUE=6e-77 ;
Q/S_length_ratio=0.944"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A3ZSI4|A3ZSI4_9PLAN ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_14900 PE=4 SV=1 ; EVALUE=1e-14 ;
Q/S_length_ratio=0.967"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A3ZWH9|A3ZWH9_9PLAN ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_26329 PE=4 SV=1 ; EVALUE=1e-12 ;
Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A3ZX69|A3ZX69_9PLAN ;
ALN/Q_length_ratio=0.803 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_27758 PE=4 SV=1 ; EVALUE=7e-10 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F0SMW5|F0SMW5_PLABD ;
ALN/Q_length_ratio=1.010 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=Plabr_2367 PE=4 SV=1 ; EVALUE=6e-09 ;
Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5T5F6|M5T5F6_9PLAN ;
ALN/Q_length_ratio=0.764 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_03146 PE=4 SV=1 ; EVALUE=6e-09 ;
Q/S_length_ratio=1.173"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DID4|L0DID4_SINAD ;
ALN/Q_length_ratio=0.640 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5005 PE=4 SV=1 ; EVALUE=3e-08 ;
Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|G2SGV7|G2SGV7_RHOMR ;
ALN/Q_length_ratio=0.443 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodothermus marinus SG0.5JP17-172
GN=Rhom172_2428 PE=3 SV=1 ; EVALUE=9e-08 ;
Q/S_length_ratio=1.036"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|B5WV43|B5WV43_9BURK ;
ALN/Q_length_ratio=0.778 ; DESCRIPTION=RNA polymerase
sigma factor OS=Burkholderia sp. H160 GN=BH160DRAFT_6946
PE=3 SV=1 ; EVALUE=5e-07 ; Q/S_length_ratio=1.147"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D0MF51|D0MF51_RHOM4 ;
ALN/Q_length_ratio=0.443 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodothermus marinus (strain ATCC 43812 /
DSM 4252 / R-10) GN=Rmar_2429 PE=3 SV=1 ; EVALUE=5e-07 ;
Q/S_length_ratio=1.036"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|V7Z880|V7Z880_9XANT ;
ALN/Q_length_ratio=0.320 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Xanthomonas hortorum
pv. carotae str. M081 GN=fecI PE=4 SV=1 ; EVALUE=8e-07 ;
Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A038H412|A0A038H412_9BURK ;
ALN/Q_length_ratio=0.778 ; DESCRIPTION=RNA polymerase
sigma factor OS=Burkholderia sp. MP-1 GN=BG58_25220 PE=3
SV=1 ; EVALUE=3e-06 ; Q/S_length_ratio=1.147"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|H5XLD6|H5XLD6_9PSEU ;
ALN/Q_length_ratio=0.473 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Saccharomonospora cyanea NA-134 GN=SaccyDRAFT_5182 PE=4
SV=1 ; EVALUE=9e-06 ; Q/S_length_ratio=1.015"
/note="Pfam_scan:hit_1 (135..188);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:2e-13; BITSCORE: 49.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MDEEQTTAVV QRYLDELAGG APAEPVVRAL LDRAVRRLHQ LCATLLYRGY PRLTQPPLNV
61 QADEMLGAVA ERLLKALREA RPANVRQFFA LAGQHTRWEL NDLARRLDEQ PRAVELPDGT
121 FPAPTTSDSG LSPIGRRMIE AIDALPEDER EVFDLVRVQG LTQVEAAEVL GVVPKTVKRR
181 LDRGLRLLTE RLGDLRPGAP DSG
//