LOCUS VTR93992.1 960 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_4458 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-3293
PROTEIN_ID VTR93992.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_37220"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DHB1|L0DHB1_SINAD ;
ALN/Q_length_ratio=1.012 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4458 PE=4 SV=1 ; EVALUE=1e-55 ;
Q/S_length_ratio=0.986"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=1.020 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=3e-42 ;
Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.740 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.001"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.906 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=1.007"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.322 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=3e-28 ;
Q/S_length_ratio=1.075"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DQ81|L0DQ81_SINAD ;
ALN/Q_length_ratio=0.475 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7511 PE=4 SV=1 ; EVALUE=3e-27 ;
Q/S_length_ratio=1.111"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.219 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=1.564"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DCW6|L0DCW6_SINAD ;
ALN/Q_length_ratio=0.197 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2795 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=2.494"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.208 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=0.782"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.548 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=4e-25 ;
Q/S_length_ratio=0.871"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.255 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=4e-25 ;
Q/S_length_ratio=1.558"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.227 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=1e-24 ;
Q/S_length_ratio=1.928"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.281 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-24 ;
Q/S_length_ratio=1.714"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.280 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=3e-23 ;
Q/S_length_ratio=3.009"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A6C2K8|A6C2K8_9PLAN ;
ALN/Q_length_ratio=0.444 ; DESCRIPTION=Probable regulatory
protein blaR1 OS=Planctomyces maris DSM 8797
GN=PM8797T_09114 PE=4 SV=1 ; EVALUE=7e-23 ;
Q/S_length_ratio=0.896"
/note="Pfam_scan:hit_1 (72..143);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:1.1e-11; BITSCORE: 44.1"
/note="Pfam_scan:hit_2 (163..216);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:47; HMM_Length:54;
EVALUE:4.7e-09; BITSCORE: 35.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPKRCEKSGP LEAALCVLTR TTAGGFMAEK PRSTVIRQLR FVVASWKEDT RTDVDLLRRF
61 IQERDEQAFT TLVGRHSELV WGVCLRVLRN PADAEDALQA TFLRLTRDAK RIINKEALGG
121 WLFRVARDCS IDLQRAITRQ RRIEERVAEV APHSGGSAAS DLRVLLDDEL AQLSQSERAV
181 LVLCCLEGRT YADAALELGC STAAVHRRFV RAQTRLRRRF AQHGKTATKI LAAVLTGAAL
241 PAASAAPPTL LAQTVETGLA VARTGTLPTT RAGAFANAAP SAVANGTNRT GIAVALLAVS
301 VVLVGCAVAF MIPPELPQAP TPEAEATPLA SSTRAQTTVT GVVRGPKGEL VAGASVVALA
361 RRPFGPGERG LRDEVIATTQ TGTDGRFALN VFDDFDTWFT GRVVTVQASG PNFAPTTFPV
421 RLRPSPGEVE LKLAAASDLR GKLLDETGHA AAGARVEVVR IGDAVAEPVV GRTESASPPA
481 WPKAVVSSAD GTFVLPALGG AENVWVRVLD PRFALDVFRV GGTKPGAIGA FRLDRACSLT
541 VEVRAGDTDA VLPGARVTVI TDPVSAHPHF CATEHGVLGP RSIPADIDAV ADSRGRVRVN
601 LTPRDQVEVL VHPLAESGPY VGVRTRVEIA TASTDQRLVV RVPRGRWLTG TVTDECGKPL
661 GGTAVHWGRE SAALPEWKDD VLVGRDAITR TAPDGVFALP VLPGACSVRV YGPTPDFETA
721 SAKLPGTTHT TIFAHHIARI EVPEHGVVQP VKATLRSARS INGTVHHPGA DSGTTILLAS
781 GRVSPVRGYA ALPLSVRGGA FSVPGCREGY TTRAYLLDPV TRTGAVADVV LGTSASNVPL
841 RACGTIRLRV LDSKGKPKAG QDVGLSLLVE RDRATDSNAT VRAADAQPVE WFDATNYPTR
901 PKTNADGVAE LPALIPGSRY AVTVGSGANR VALGKFAIEP GKTITIPDVV LPGPSEGGTQ
//