LOCUS VTR93893.1 188 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-e factor : RNA
polymerase sigma-E factor OS=Rhodopirellula europaea SH398
GN=RESH_01186 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-3194
PROTEIN_ID VTR93893.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_38210"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M2ACE2|M2ACE2_9PLAN ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula europaea 6C GN=RE6C_04957
PE=4 SV=1 ; EVALUE=1e-29 ; Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|M5S9R0|M5S9R0_9PLAN ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula europaea SH398
GN=RESH_01186 PE=4 SV=1 ; EVALUE=1e-29 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|F2AKJ6|F2AKJ6_RHOBT ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula baltica WH47
GN=RBWH47_00968 PE=4 SV=1 ; EVALUE=7e-29 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L7CN71|L7CN71_RHOBT ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_01077 PE=4 SV=1 ; EVALUE=2e-28 ;
Q/S_length_ratio=0.814"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5TIA6|M5TIA6_9PLAN ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula sp.
SWK7 GN=RRSWK_02250 PE=4 SV=1 ; EVALUE=2e-28 ;
Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|K5CF58|K5CF58_RHOBT ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica SH28 GN=RBSH_02164 PE=4 SV=1 ; EVALUE=3e-28 ;
Q/S_length_ratio=0.814"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|Q7UPG3|Q7UPG3_RHOBA ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=Probable RNA
polymerase sigma-E factor (ECF subfamily of sigma-70)
OS=Rhodopirellula baltica (strain SH1) GN=RB6961 PE=4 SV=1
; EVALUE=3e-28 ; Q/S_length_ratio=0.814"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5UBX1|M5UBX1_9PLAN ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
sallentina SM41 GN=RSSM_03163 PE=4 SV=1 ; EVALUE=3e-27 ;
Q/S_length_ratio=0.870"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5RNZ9|M5RNZ9_9PLAN ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula maiorica SM1
GN=RMSM_02030 PE=4 SV=1 ; EVALUE=1e-26 ;
Q/S_length_ratio=0.964"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DN70|L0DN70_SINAD ;
ALN/Q_length_ratio=0.867 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6754 PE=4 SV=1 ; EVALUE=9e-22 ;
Q/S_length_ratio=0.940"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A090KMG5|A0A090KMG5_9BACT ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-20 ;
Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5UMY5|M5UMY5_9PLAN ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula sallentina SM41
GN=RSSM_01214 PE=4 SV=1 ; EVALUE=3e-20 ;
Q/S_length_ratio=0.959"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5RQ06|M5RQ06_9PLAN ;
ALN/Q_length_ratio=0.952 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula maiorica SM1
GN=RMSM_01660 PE=4 SV=1 ; EVALUE=8e-19 ;
Q/S_length_ratio=0.900"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DPG0|L0DPG0_SINAD ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6490 PE=4 SV=1 ; EVALUE=3e-18 ;
Q/S_length_ratio=0.913"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A6C666|A6C666_9PLAN ;
ALN/Q_length_ratio=0.867 ; DESCRIPTION=Probable
RNA-polymerase sigma-E factor OS=Planctomyces maris DSM
8797 GN=PM8797T_31208 PE=4 SV=1 ; EVALUE=1e-17 ;
Q/S_length_ratio=0.959"
/note="Pfam_scan:hit_1 (8..82); Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71;
EVALUE:6.7e-08; BITSCORE: 32.0"
/note="Pfam_scan:hit_2 (124..177);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:1.1e-10; BITSCORE: 40.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MIDTGTELDR YRPLLRLHVR QLQLGRLYRA RFDSSDVVQE SLLRAFRGID QVRGRSEAEL
61 VGWLQKVVAH TVIDLVREHS AAKRDPGLER TLCDAVDDDE TPLGAYLTAT EPGPSAQAVR
121 KEELLCLAAA LDRLPEAERD AVIAHYILEL PLAETATRLG RTTRGVGGLL FRGKRRLSAL
181 LAAPEDLA
//