LOCUS VTR93817.1 843 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_5383 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: HEAT_2: T2SG protein.
ACCESSION LR593886-3118
PROTEIN_ID VTR93817.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_38970"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.256 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=7e-40 ;
Q/S_length_ratio=2.643"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.268 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=9e-39 ;
Q/S_length_ratio=1.988"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.325 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=1.373"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.358 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=1.412"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.320 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=1e-37 ;
Q/S_length_ratio=1.505"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.389 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=8e-37 ;
Q/S_length_ratio=1.391"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.325 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=7e-36 ;
Q/S_length_ratio=1.474"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DCW6|L0DCW6_SINAD ;
ALN/Q_length_ratio=0.228 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2795 PE=4 SV=1 ; EVALUE=9e-36 ;
Q/S_length_ratio=2.190"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.306 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.749"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.314 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.522"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DE85|L0DE85_SINAD ;
ALN/Q_length_ratio=0.326 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3292 PE=4 SV=1 ; EVALUE=4e-35 ;
Q/S_length_ratio=1.609"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.234 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=6e-35 ;
Q/S_length_ratio=0.885"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.314 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=1.912"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.384 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=5e-34 ;
Q/S_length_ratio=1.369"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.333 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=9e-33 ;
Q/S_length_ratio=0.944"
/note="Pfam_scan:hit_1 (39..107);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:5.6e-12; BITSCORE: 45.0"
/note="Pfam_scan:hit_2 (131..184);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:4.8e-08; BITSCORE: 32.3"
/note="Pfam_scan:hit_3 (493..571); Pfam:PF13646.1:HEAT_2;
Pfam_type:Family;HMM_aln_Length:59; HMM_Length:88;
EVALUE:1.8e-06; BITSCORE: 28.0"
/note="Pfam_scan:hit_4 (650..744); Pfam:PF08334.6:T2SG;
Pfam_type:Family;HMM_aln_Length:89; HMM_Length:108;
EVALUE:2e-08; BITSCORE: 33.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPDAHALARL ATLAHTGLPD HTLLDRFAAD RDECAFAALV ERHGPVVLDV ARAVLRHAQD
61 AEDVFQASFL VLARNASTIR TRTSVGCWLH GVARRLALKA LRARARRSRH EAVPRVAALA
121 PGDELTWGEV RALIHDELAQ LPDALRAPVL LCHLEGLTID EAAARLALPR GTLRDRLDRG
181 RAVLRKRLAQ RGLAVAAIAF PTAISNAVPP LTVLGTARSA IRFASGIGDR SRAAELANGA
241 MPAMIPARFK LGLLFAITFG AVGLVVAGIR DVEAPAVEVP GEVSAVDPPD APPPEVVRAD
301 LPVAPPPAAA PRIGFESITV VIKPPGLSNQ PGATIRISSD GSCLCEIPGR IPPGGREPLL
361 GARLVHKLPL DRLRTLNELL KDTDWLKKDA KDVMRLHAAE YAITLEQNIG QKNHVKRTLK
421 IAGESEVYPK VLHFFDSIAH QEHLLYRLEW VPETMADARR DLDNIIGGEL GELIGRSQYV
481 IDLTRFTPWA KRTVRNSFNK QVDEVRVAVR LIGLLKLESE REHVNDLATD RDSSVRSAVA
541 LAVARLGGEK AVPVLRKMLR STSEAPWELI KLGAIAVPTI AEVIRDGGDP NDMGYEHLIR
601 AYIDNWKNVP LPFNKSIADA VKAGMVSAKE KAVRTQYHAE LLKLIEAPPP PEDPKLGRAR
661 TDVLNLANAI EAFKAKTGVY PEKLAALKDS GFVAPDTSLR DPWGSEYRYD PMGTRNSTGR
721 SDVWTVSPDK VEIGNWAADL WGEWGLLSLI SKPTVREHWE FGANMIRVYK LDNTVYRGTW
781 YTLDASQELK QINLVIDGVT HKGIYEVKGD TLRVSHGLSD KDERPKDFEG GEHATVLVFK
841 RQK
//