LOCUS VTR93812.1 262 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana ribosomal large subunit pseudouridine
synthase b : Pseudouridine synthase OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_2753 PE=
3 SV=1: S4: PseudoU_synth_2 protein.
ACCESSION LR593886-3113
PROTEIN_ID VTR93812.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_39020"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|E8R0I7|E8R0I7_ISOPI ;
ALN/Q_length_ratio=0.885 ; DESCRIPTION=Pseudouridine
synthase OS=Isosphaera pallida (strain ATCC 43644 / DSM
9630 / IS1B) GN=Isop_2753 PE=3 SV=1 ; EVALUE=8e-87 ;
Q/S_length_ratio=0.400"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D5SZ51|D5SZ51_PLAL2 ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=Pseudouridine
synthase OS=Planctomyces limnophilus (strain ATCC 43296 /
DSM 3776 / IFAM 1008 / 290) GN=Plim_4141 PE=3 SV=1 ;
EVALUE=6e-80 ; Q/S_length_ratio=0.473"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A6C4P7|A6C4P7_9PLAN ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=Pseudouridine
synthase OS=Planctomyces maris DSM 8797 GN=PM8797T_25821
PE=3 SV=1 ; EVALUE=7e-77 ; Q/S_length_ratio=0.744"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0SMC1|F0SMC1_PLABD ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=Pseudouridine
synthase OS=Planctomyces brasiliensis (strain ATCC 49424 /
DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_4529 PE=3 SV=1 ; EVALUE=1e-76 ;
Q/S_length_ratio=0.712"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L7CHI6|L7CHI6_RHOBT ;
ALN/Q_length_ratio=0.931 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula baltica SWK14 GN=RBSWK_02714
PE=3 SV=1 ; EVALUE=6e-75 ; Q/S_length_ratio=0.663"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5SHK7|M5SHK7_9PLAN ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula europaea SH398 GN=RESH_02194
PE=3 SV=1 ; EVALUE=6e-75 ; Q/S_length_ratio=0.665"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M2B134|M2B134_9PLAN ;
ALN/Q_length_ratio=0.931 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula europaea 6C GN=RE6C_03333 PE=3
SV=1 ; EVALUE=7e-75 ; Q/S_length_ratio=0.665"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K5CII8|K5CII8_RHOBT ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula baltica SH28 GN=RBSH_00601 PE=3
SV=1 ; EVALUE=8e-75 ; Q/S_length_ratio=0.663"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7UUP0|Q7UUP0_RHOBA ;
ALN/Q_length_ratio=0.927 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula baltica (strain SH1) GN=RB3174
PE=3 SV=1 ; EVALUE=1e-74 ; Q/S_length_ratio=0.663"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|F2AZ13|F2AZ13_RHOBT ;
ALN/Q_length_ratio=0.927 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula baltica WH47 GN=RBWH47_04935
PE=3 SV=1 ; EVALUE=1e-74 ; Q/S_length_ratio=0.663"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5T4D0|M5T4D0_9PLAN ;
ALN/Q_length_ratio=0.908 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula sp. SWK7 GN=RRSWK_03442 PE=3
SV=1 ; EVALUE=4e-74 ; Q/S_length_ratio=0.650"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5UF79|M5UF79_9PLAN ;
ALN/Q_length_ratio=0.908 ; DESCRIPTION=Pseudouridine
synthase OS=Rhodopirellula sallentina SM41 GN=RSSM_03905
PE=3 SV=1 ; EVALUE=4e-73 ; Q/S_length_ratio=0.649"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|X0RLF3|X0RLF3_9ZZZZ ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L02063 OS=marine sediment
metagenome GN=S01H1_07554 PE=4 SV=1 ; EVALUE=8e-71 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A3ZQL4|A3ZQL4_9PLAN ;
ALN/Q_length_ratio=0.885 ; DESCRIPTION=Pseudouridine
synthase OS=Blastopirellula marina DSM 3645
GN=DSM3645_20312 PE=3 SV=1 ; EVALUE=2e-69 ;
Q/S_length_ratio=0.507"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q1Q1Q0|Q1Q1Q0_9BACT ;
ALN/Q_length_ratio=0.882 ; DESCRIPTION=Pseudouridine
synthase OS=Candidatus Kuenenia stuttgartiensis
GN=kuste3173 PE=3 SV=1 ; EVALUE=7e-68 ;
Q/S_length_ratio=1.008"
/note="Pfam_scan:hit_1 (2..47); Pfam:PF01479.20:S4;
Pfam_type:Domain;HMM_aln_Length:43; HMM_Length:48;
EVALUE:3.1e-10; BITSCORE: 39.3"
/note="Pfam_scan:hit_2 (62..195);
Pfam:PF00849.17:PseudoU_synth_2;
Pfam_type:Family;HMM_aln_Length:161; HMM_Length:164;
EVALUE:6e-20; BITSCORE: 71.7"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0016853"
/note="Enzyme_Code:EC:5.4.99.12"
BEGIN
1 MQRLNKYLAH AGVGSRRHCD KLIAAGRVKV DGVRVKELGL KIDPAHHQVA VDDQPVKAEK
61 LVYWAVNKPV GHLCTNHDPA GRPRAVDLLP HVEQRVYTVG RLDEGSDGLL LMTNDGDLAM
121 GLTHPRYGVP KTYFVLVAGR PTDEDLQKLL DGVWLSDGKV RAKSVKRVKA QGNGTWLRVI
181 LTEGKNREIR RMLAKLDHKV MRLKRVAIGP VKLDKLPKGK ARRISEDELK ELKLFVTKSQ
241 EKITAARLRA SEKKADPGDR PA
//