LOCUS VTR93713.1 986 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana dna topoisomerase i : DNA topoisomerase
1 OS=uncultured planctomycete GN=topA PE=3 SV=1: Toprim:
Topoisom_bac: zf-C4_Topoisom: zf-C4_Topoisom: zf-C4_Topoisom:
zf-C4_Topoisom protein.
ACCESSION LR593886-3014
PROTEIN_ID VTR93713.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_40010"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DLK2|L0DLK2_SINAD ;
ALN/Q_length_ratio=0.891 ; DESCRIPTION=DNA topoisomerase 1
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=topA PE=3 SV=1 ; EVALUE=0.0
; Q/S_length_ratio=1.100"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|H5SLX2|H5SLX2_9BACT ;
ALN/Q_length_ratio=0.575 ; DESCRIPTION=DNA topoisomerase
(Fragment) OS=uncultured planctomycete GN=HGMM_F48A06C01
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.727"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|H5SCU4|H5SCU4_9BACT ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=DNA topoisomerase 1
OS=uncultured planctomycete GN=topA PE=3 SV=1 ; EVALUE=0.0
; Q/S_length_ratio=1.119"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0S425|F0S425_DESTD ;
ALN/Q_length_ratio=0.700 ; DESCRIPTION=DNA topoisomerase 1
OS=Desulfurobacterium thermolithotrophum (strain DSM 11699
/ BSA) GN=topA PE=3 SV=1 ; EVALUE=1e-178 ;
Q/S_length_ratio=1.411"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|E8R4T3|E8R4T3_ISOPI ;
ALN/Q_length_ratio=0.617 ; DESCRIPTION=DNA topoisomerase 1
OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 /
IS1B) GN=topA PE=3 SV=1 ; EVALUE=1e-173 ;
Q/S_length_ratio=1.023"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|Q1PYZ6|Q1PYZ6_9BACT ;
ALN/Q_length_ratio=0.761 ; DESCRIPTION=DNA topoisomerase 1
OS=Candidatus Kuenenia stuttgartiensis GN=topA PE=3 SV=1 ;
EVALUE=1e-169 ; Q/S_length_ratio=1.276"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|H8MR75|H8MR75_CORCM ;
ALN/Q_length_ratio=0.810 ; DESCRIPTION=DNA topoisomerase 1
OS=Corallococcus coralloides (strain ATCC 25202 / DSM 2259
/ NBRC 100086 / M2) GN=topA PE=3 SV=1 ; EVALUE=1e-169 ;
Q/S_length_ratio=1.141"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D1CEQ0|D1CEQ0_THET1 ;
ALN/Q_length_ratio=0.706 ; DESCRIPTION=DNA topoisomerase 1
OS=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1)
GN=topA PE=3 SV=1 ; EVALUE=1e-168 ;
Q/S_length_ratio=1.387"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|Q67PC7|Q67PC7_SYMTH ;
ALN/Q_length_ratio=0.735 ; DESCRIPTION=DNA topoisomerase 1
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=topA PE=3 SV=1 ; EVALUE=1e-165 ;
Q/S_length_ratio=1.341"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|E3FI90|E3FI90_STIAD ;
ALN/Q_length_ratio=0.775 ; DESCRIPTION=DNA topoisomerase 1
OS=Stigmatella aurantiaca (strain DW4/3-1) GN=topA PE=3
SV=1 ; EVALUE=1e-164 ; Q/S_length_ratio=1.171"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L7U9N6|L7U9N6_MYXSD ;
ALN/Q_length_ratio=0.803 ; DESCRIPTION=DNA topoisomerase 1
OS=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 /
Mx s8) GN=topA PE=3 SV=1 ; EVALUE=1e-164 ;
Q/S_length_ratio=1.152"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|E8WQN5|E8WQN5_GEOS8 ;
ALN/Q_length_ratio=0.775 ; DESCRIPTION=DNA topoisomerase 1
OS=Geobacter sp. (strain M18) GN=topA PE=3 SV=1 ;
EVALUE=1e-162 ; Q/S_length_ratio=1.266"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|Q2LT40|Q2LT40_SYNAS ;
ALN/Q_length_ratio=0.764 ; DESCRIPTION=DNA topoisomerase 1
OS=Syntrophus aciditrophicus (strain SB) GN=topA PE=3 SV=1
; EVALUE=1e-157 ; Q/S_length_ratio=1.282"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|E6QI81|E6QI81_9ZZZZ ;
ALN/Q_length_ratio=0.741 ; DESCRIPTION=DNA topoisomerase I
OS=mine drainage metagenome GN=topA PE=3 SV=1 ;
EVALUE=1e-153 ; Q/S_length_ratio=1.117"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|X2H977|X2H977_9NEIS ;
ALN/Q_length_ratio=0.746 ; DESCRIPTION=DNA topoisomerase 1
OS=Snodgrassella alvi wkB2 GN=topA PE=3 SV=1 ;
EVALUE=1e-147 ; Q/S_length_ratio=1.291"
/note="Pfam_scan:hit_1 (50..178); Pfam:PF01751.17:Toprim;
Pfam_type:Family;HMM_aln_Length:98; HMM_Length:100;
EVALUE:2.2e-21; BITSCORE: 75.7"
/note="Pfam_scan:hit_2 (192..686);
Pfam:PF01131.15:Topoisom_bac;
Pfam_type:Family;HMM_aln_Length:401; HMM_Length:403;
EVALUE:3.1e-119; BITSCORE: 398.4"
/note="Pfam_scan:hit_3 (711..753);
Pfam:PF01396.14:zf-C4_Topoisom;
Pfam_type:Family;HMM_aln_Length:33; HMM_Length:39;
EVALUE:6.9e-07; BITSCORE: 28.6"
/note="Pfam_scan:hit_4 (764..802);
Pfam:PF01396.14:zf-C4_Topoisom;
Pfam_type:Family;HMM_aln_Length:34; HMM_Length:39;
EVALUE:1.7e-07; BITSCORE: 30.5"
/note="Pfam_scan:hit_5 (862..900);
Pfam:PF01396.14:zf-C4_Topoisom;
Pfam_type:Family;HMM_aln_Length:35; HMM_Length:39;
EVALUE:4.1e-11; BITSCORE: 42.1"
/note="Pfam_scan:hit_6 (929..968);
Pfam:PF01396.14:zf-C4_Topoisom;
Pfam_type:Family;HMM_aln_Length:28; HMM_Length:39;
EVALUE:1.7e-08; BITSCORE: 33.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0051276"
/note="GO_domain:GO:0005694"
/note="GO_domain:GO:0006259"
/note="GO_domain:GO:0016853"
/note="Enzyme_Code:EC:5.99.1"
/note="Enzyme_Code:EC:5.99.1.2"
BEGIN
1 MPTPKKNAAT DKPAAAKKPR TKKAAAQSPA ADAPDAPTKA APSGPRGNYD LVVVESPAKA
61 KTINKYLGPN FRVLASYGHV RDLDTKKKKG EDIAGIDITN GWKLRYTVDD GSKDSGRGGR
121 KFRTAKEILA EIGREAAKAN HVYLASDPDR EGESIAWHIA DELKLPDERT FRIRFNEITK
181 NAVNAALSNA EKINDLRVAA QEARRAMDRV VGFPLSNLLG KKVANKLSAG RVQSVAVKLI
241 VDREREIEAF KTEEYWKITA LLSAPGVNIP WTADPAKSKI FAKKKTEVAK PVAWHKPTEE
301 DTQGDDEPVV DTETSDVPPE PGEAAAPAAT DGAGIPAPPK DSFLANLVKW DNAEPKLTNE
361 TEADAVVAAL AGAPFVVTKV EQKDRVDRPL APFTTSTLQQ QANARMKFSA SRTMQTAQKL
421 YEGIELTGMG QTALITYMRT DSTRVSNDAL AAVRDFIKAD ARLGTNYLPS APNTYASNKG
481 AQEGHEAIRP TDVTITPARA QAAGLGGDQL RLYELIWKRF VASQCVPAKL KVTTYDITAG
541 RGLFRASGRV IAFDGYRRVL PPVGKQEDAE LPPVKEKDVL NRLDLFESQH FTQPPPRFNE
601 GSLVKALEKE GIGRPSTYAS IISTIQKRGY VTQDRGRFFA TEIGKVVTDL LVKHFPDIMD
661 LKFTSHFEDE LDEIETGKFK YREVLDEFWG KFSPTLKKAD SEMPVARELT GEMCPKCGKP
721 LQKRYSATTG GFFIGCTGYT DDPACKYIQP RPGEAEREGP TTTDIVCPAC GKFMIRKVGR
781 FGVFYTCEGA PDCPTTMNEN AEGVRTVTAL PTKHKCPKCE KHNLLLKESK AGKKYVQCPD
841 TKCKFISDAD ADGAPVKPAD TGIACEKCGS PMVIKVAWRG PFLSCSGYPK CRNAKSINAE
901 LKEKLKDILP PMPEKTEKKK EEMPAVEISD TCPECGASMK LMKSRFGPGY YLGCSKYPKC
961 KGKGKMTPEL QAKIDAATAA QAPAAT
//