LOCUS VTR93713.1 986 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana dna topoisomerase i : DNA topoisomerase 1 OS=uncultured planctomycete GN=topA PE=3 SV=1: Toprim: Topoisom_bac: zf-C4_Topoisom: zf-C4_Topoisom: zf-C4_Topoisom: zf-C4_Topoisom protein. ACCESSION LR593886-3014 PROTEIN_ID VTR93713.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_40010" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|L0DLK2|L0DLK2_SINAD ; ALN/Q_length_ratio=0.891 ; DESCRIPTION=DNA topoisomerase 1 OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=topA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.100" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|H5SLX2|H5SLX2_9BACT ; ALN/Q_length_ratio=0.575 ; DESCRIPTION=DNA topoisomerase (Fragment) OS=uncultured planctomycete GN=HGMM_F48A06C01 PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.727" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|H5SCU4|H5SCU4_9BACT ; ALN/Q_length_ratio=0.889 ; DESCRIPTION=DNA topoisomerase 1 OS=uncultured planctomycete GN=topA PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.119" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|F0S425|F0S425_DESTD ; ALN/Q_length_ratio=0.700 ; DESCRIPTION=DNA topoisomerase 1 OS=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) GN=topA PE=3 SV=1 ; EVALUE=1e-178 ; Q/S_length_ratio=1.411" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|E8R4T3|E8R4T3_ISOPI ; ALN/Q_length_ratio=0.617 ; DESCRIPTION=DNA topoisomerase 1 OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=topA PE=3 SV=1 ; EVALUE=1e-173 ; Q/S_length_ratio=1.023" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|Q1PYZ6|Q1PYZ6_9BACT ; ALN/Q_length_ratio=0.761 ; DESCRIPTION=DNA topoisomerase 1 OS=Candidatus Kuenenia stuttgartiensis GN=topA PE=3 SV=1 ; EVALUE=1e-169 ; Q/S_length_ratio=1.276" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|H8MR75|H8MR75_CORCM ; ALN/Q_length_ratio=0.810 ; DESCRIPTION=DNA topoisomerase 1 OS=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) GN=topA PE=3 SV=1 ; EVALUE=1e-169 ; Q/S_length_ratio=1.141" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|D1CEQ0|D1CEQ0_THET1 ; ALN/Q_length_ratio=0.706 ; DESCRIPTION=DNA topoisomerase 1 OS=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) GN=topA PE=3 SV=1 ; EVALUE=1e-168 ; Q/S_length_ratio=1.387" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|Q67PC7|Q67PC7_SYMTH ; ALN/Q_length_ratio=0.735 ; DESCRIPTION=DNA topoisomerase 1 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=topA PE=3 SV=1 ; EVALUE=1e-165 ; Q/S_length_ratio=1.341" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|E3FI90|E3FI90_STIAD ; ALN/Q_length_ratio=0.775 ; DESCRIPTION=DNA topoisomerase 1 OS=Stigmatella aurantiaca (strain DW4/3-1) GN=topA PE=3 SV=1 ; EVALUE=1e-164 ; Q/S_length_ratio=1.171" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|L7U9N6|L7U9N6_MYXSD ; ALN/Q_length_ratio=0.803 ; DESCRIPTION=DNA topoisomerase 1 OS=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) GN=topA PE=3 SV=1 ; EVALUE=1e-164 ; Q/S_length_ratio=1.152" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|E8WQN5|E8WQN5_GEOS8 ; ALN/Q_length_ratio=0.775 ; DESCRIPTION=DNA topoisomerase 1 OS=Geobacter sp. (strain M18) GN=topA PE=3 SV=1 ; EVALUE=1e-162 ; Q/S_length_ratio=1.266" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|Q2LT40|Q2LT40_SYNAS ; ALN/Q_length_ratio=0.764 ; DESCRIPTION=DNA topoisomerase 1 OS=Syntrophus aciditrophicus (strain SB) GN=topA PE=3 SV=1 ; EVALUE=1e-157 ; Q/S_length_ratio=1.282" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|E6QI81|E6QI81_9ZZZZ ; ALN/Q_length_ratio=0.741 ; DESCRIPTION=DNA topoisomerase I OS=mine drainage metagenome GN=topA PE=3 SV=1 ; EVALUE=1e-153 ; Q/S_length_ratio=1.117" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|X2H977|X2H977_9NEIS ; ALN/Q_length_ratio=0.746 ; DESCRIPTION=DNA topoisomerase 1 OS=Snodgrassella alvi wkB2 GN=topA PE=3 SV=1 ; EVALUE=1e-147 ; Q/S_length_ratio=1.291" /note="Pfam_scan:hit_1 (50..178); Pfam:PF01751.17:Toprim; Pfam_type:Family;HMM_aln_Length:98; HMM_Length:100; EVALUE:2.2e-21; BITSCORE: 75.7" /note="Pfam_scan:hit_2 (192..686); Pfam:PF01131.15:Topoisom_bac; Pfam_type:Family;HMM_aln_Length:401; HMM_Length:403; EVALUE:3.1e-119; BITSCORE: 398.4" /note="Pfam_scan:hit_3 (711..753); Pfam:PF01396.14:zf-C4_Topoisom; Pfam_type:Family;HMM_aln_Length:33; HMM_Length:39; EVALUE:6.9e-07; BITSCORE: 28.6" /note="Pfam_scan:hit_4 (764..802); Pfam:PF01396.14:zf-C4_Topoisom; Pfam_type:Family;HMM_aln_Length:34; HMM_Length:39; EVALUE:1.7e-07; BITSCORE: 30.5" /note="Pfam_scan:hit_5 (862..900); Pfam:PF01396.14:zf-C4_Topoisom; Pfam_type:Family;HMM_aln_Length:35; HMM_Length:39; EVALUE:4.1e-11; BITSCORE: 42.1" /note="Pfam_scan:hit_6 (929..968); Pfam:PF01396.14:zf-C4_Topoisom; Pfam_type:Family;HMM_aln_Length:28; HMM_Length:39; EVALUE:1.7e-08; BITSCORE: 33.8" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0051276" /note="GO_domain:GO:0005694" /note="GO_domain:GO:0006259" /note="GO_domain:GO:0016853" /note="Enzyme_Code:EC:5.99.1" /note="Enzyme_Code:EC:5.99.1.2" BEGIN 1 MPTPKKNAAT DKPAAAKKPR TKKAAAQSPA ADAPDAPTKA APSGPRGNYD LVVVESPAKA 61 KTINKYLGPN FRVLASYGHV RDLDTKKKKG EDIAGIDITN GWKLRYTVDD GSKDSGRGGR 121 KFRTAKEILA EIGREAAKAN HVYLASDPDR EGESIAWHIA DELKLPDERT FRIRFNEITK 181 NAVNAALSNA EKINDLRVAA QEARRAMDRV VGFPLSNLLG KKVANKLSAG RVQSVAVKLI 241 VDREREIEAF KTEEYWKITA LLSAPGVNIP WTADPAKSKI FAKKKTEVAK PVAWHKPTEE 301 DTQGDDEPVV DTETSDVPPE PGEAAAPAAT DGAGIPAPPK DSFLANLVKW DNAEPKLTNE 361 TEADAVVAAL AGAPFVVTKV EQKDRVDRPL APFTTSTLQQ QANARMKFSA SRTMQTAQKL 421 YEGIELTGMG QTALITYMRT DSTRVSNDAL AAVRDFIKAD ARLGTNYLPS APNTYASNKG 481 AQEGHEAIRP TDVTITPARA QAAGLGGDQL RLYELIWKRF VASQCVPAKL KVTTYDITAG 541 RGLFRASGRV IAFDGYRRVL PPVGKQEDAE LPPVKEKDVL NRLDLFESQH FTQPPPRFNE 601 GSLVKALEKE GIGRPSTYAS IISTIQKRGY VTQDRGRFFA TEIGKVVTDL LVKHFPDIMD 661 LKFTSHFEDE LDEIETGKFK YREVLDEFWG KFSPTLKKAD SEMPVARELT GEMCPKCGKP 721 LQKRYSATTG GFFIGCTGYT DDPACKYIQP RPGEAEREGP TTTDIVCPAC GKFMIRKVGR 781 FGVFYTCEGA PDCPTTMNEN AEGVRTVTAL PTKHKCPKCE KHNLLLKESK AGKKYVQCPD 841 TKCKFISDAD ADGAPVKPAD TGIACEKCGS PMVIKVAWRG PFLSCSGYPK CRNAKSINAE 901 LKEKLKDILP PMPEKTEKKK EEMPAVEISD TCPECGASMK LMKSRFGPGY YLGCSKYPKC 961 KGKGKMTPEL QAKIDAATAA QAPAAT //