LOCUS VTR93493.1 647 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana fis family transcriptional regulator
: Transcriptional regulator, NifA subfamily, Fis Family
OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB
4128) GN=Psta_3595 PE=4 SV=1: FHA: GAF_2: Sigma54_activat:
HTH_8 protein.
ACCESSION LR593886-2794
PROTEIN_ID VTR93493.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_42210"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D2QZ64|D2QZ64_PIRSD ;
ALN/Q_length_ratio=1.029 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_3595
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.956"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A4A0U9|A4A0U9_9PLAN ;
ALN/Q_length_ratio=1.034 ; DESCRIPTION=Ornithine
decarboxylase inhibitor-putative sigma54 transciptional
regulator OS=Blastopirellula marina DSM 3645
GN=DSM3645_24812 PE=4 SV=1 ; EVALUE=1e-176 ;
Q/S_length_ratio=0.953"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D5SYE9|D5SYE9_PLAL2 ;
ALN/Q_length_ratio=1.012 ; DESCRIPTION=Sigma-54 factor
interaction domain-containing protein OS=Planctomyces
limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 /
290) GN=Plim_1847 PE=4 SV=1 ; EVALUE=1e-168 ;
Q/S_length_ratio=0.959"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A6CG13|A6CG13_9PLAN ;
ALN/Q_length_ratio=0.909 ; DESCRIPTION=Ornithine
decarboxylase inhibitor-putative sigma54 transciptional
regulator (Fragment) OS=Planctomyces maris DSM 8797
GN=PM8797T_17439 PE=4 SV=1 ; EVALUE=1e-165 ;
Q/S_length_ratio=1.071"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SSP2|F0SSP2_PLABD ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=Sigma54 specific
transcriptional regulator, Fis family OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_2759 PE=4 SV=1 ;
EVALUE=1e-160 ; Q/S_length_ratio=0.961"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5R6Z9|M5R6Z9_9PLAN ;
ALN/Q_length_ratio=1.065 ; DESCRIPTION=Two component,
sigma54 specific, transcriptional regulator, Fis family
OS=Rhodopirellula maiorica SM1 GN=RMSM_07801 PE=4 SV=1 ;
EVALUE=1e-135 ; Q/S_length_ratio=0.924"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5TL88|M5TL88_9PLAN ;
ALN/Q_length_ratio=0.716 ; DESCRIPTION=Two component,
sigma54 specific, transcriptional regulator, Fis family
OS=Rhodopirellula sp. SWK7 GN=RRSWK_02614 PE=4 SV=1 ;
EVALUE=1e-113 ; Q/S_length_ratio=0.988"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5RZA9|M5RZA9_9PLAN ;
ALN/Q_length_ratio=1.105 ; DESCRIPTION=Sigma54 specific
transcriptional regulator, Fis family OS=Rhodopirellula
europaea SH398 GN=RESH_04785 PE=4 SV=1 ; EVALUE=1e-112 ;
Q/S_length_ratio=0.895"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|D2R3W1|D2R3W1_PIRSD ;
ALN/Q_length_ratio=0.918 ; DESCRIPTION=Sigma54 specific
transcriptional regulator, Fis family OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_4161
PE=4 SV=1 ; EVALUE=1e-112 ; Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5U248|M5U248_9PLAN ;
ALN/Q_length_ratio=0.728 ; DESCRIPTION=Two component,
sigma54 specific, Fis family transcriptional regulator
OS=Rhodopirellula sallentina SM41 GN=RSSM_03074 PE=4 SV=1
; EVALUE=1e-111 ; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A3ZZQ6|A3ZZQ6_9PLAN ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=Nitrogen fixation
protein anfA (Sigma-54 dependendent transcription
regulator) OS=Blastopirellula marina DSM 3645
GN=DSM3645_16050 PE=4 SV=1 ; EVALUE=1e-109 ;
Q/S_length_ratio=1.057"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M2APJ8|M2APJ8_9PLAN ;
ALN/Q_length_ratio=0.697 ; DESCRIPTION=Sigma54 specific
transcriptional regulator, Fis family OS=Rhodopirellula
europaea 6C GN=RE6C_04474 PE=4 SV=1 ; EVALUE=1e-107 ;
Q/S_length_ratio=0.897"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|K5DLD2|K5DLD2_RHOBT ;
ALN/Q_length_ratio=0.699 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
baltica SH28 GN=RBSH_01138 PE=4 SV=1 ; EVALUE=1e-106 ;
Q/S_length_ratio=0.860"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L7CMU7|L7CMU7_RHOBT ;
ALN/Q_length_ratio=0.699 ; DESCRIPTION=Transcriptional
regulator, NifA subfamily, Fis Family OS=Rhodopirellula
baltica SWK14 GN=RBSWK_00833 PE=4 SV=1 ; EVALUE=1e-106 ;
Q/S_length_ratio=0.860"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q7UT14|Q7UT14_RHOBA ;
ALN/Q_length_ratio=0.708 ; DESCRIPTION=Ornithine
decarboxylase inhibitor-putative sigma54 transciptional
regulator OS=Rhodopirellula baltica (strain SH1) GN=RB4179
PE=4 SV=1 ; EVALUE=1e-105 ; Q/S_length_ratio=0.855"
/note="Pfam_scan:hit_1 (31..95); Pfam:PF00498.21:FHA;
Pfam_type:Family;HMM_aln_Length:67; HMM_Length:68;
EVALUE:8.6e-14; BITSCORE: 51.4"
/note="Pfam_scan:hit_2 (175..313); Pfam:PF13185.1:GAF_2;
Pfam_type:Domain;HMM_aln_Length:144; HMM_Length:148;
EVALUE:1.4e-09; BITSCORE: 38.6"
/note="Pfam_scan:hit_3 (338..505);
Pfam:PF00158.21:Sigma54_activat;
Pfam_type:Domain;HMM_aln_Length:166; HMM_Length:168;
EVALUE:3e-66; BITSCORE: 222.0"
/note="Pfam_scan:hit_4 (602..643); Pfam:PF02954.14:HTH_8;
Pfam_type:Domain;HMM_aln_Length:40; HMM_Length:42;
EVALUE:4.6e-15; BITSCORE: 54.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0008134"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPMAQPPSAF LVARRDDGFG DVFPLHEGTR YKLGRAPTNR VVLRDDLCSR EHAEVFAAEG
61 GWFVRDLGSL NGTHLNGETL RTDRALRPLD EVRVGRTRLL FIEEMSQLPD LPKSAIKPVE
121 KVDGLEIRKR LSQTRYQQTG ATNVPEPETV RVDARVAPPQ AIGVLYRLAL DMAAAADTGE
181 LCALAVDSVF RATPAEVVAV LALKEPKELE LLTHRVRGGG PATYHKVSQF VSSEVLSGKQ
241 AVLAENVAAN RMLADRDSIA ELKVASLICA PIVFDDKVLG LLHLYRTLGH SPLNTDDLEF
301 TLAVARQLGT AWHKLTRQVN LSAENRSLRT QLRIESEIVG GSEPLRKIEG QIARVGETRA
361 TVLIRGESGS GKELVARAIH QNSPRHEGAF ICLNCAALTE TLLESELFGH EKGAFTGATE
421 RMVGKFEAAD NGTIFLDEIG EMALTTQAKF LRVLEGHPFE RVGGNVAIKV DVRVVAATNR
481 PLEEAVRAGT FRRDLFYRLQ VVQLDVPPLR ERLDDVPLLA EHFLKKFVRE TGRKIKSFTP
541 AALDKLRTYR WPGNVRELRN VIERAVALGI GPHLDTADIW LSELDVGAPV VGVAAFAYRP
601 EPLDDVEKRH ILETLKHTDW NKSKAATILG IERSTLDRKI EKFGLVK
//