LOCUS VTR93344.1 203 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-70 ecf-like protein
: DNA-directed RNA polymerase specialized sigma subunit,
sigma24 OS=Singulisphaera acidiphila (strain ATCC BAA-
1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4904 PE=
4 SV=1: Sigma70_ECF protein.
ACCESSION LR593886-2645
PROTEIN_ID VTR93344.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_43700"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DJN8|L0DJN8_SINAD ;
ALN/Q_length_ratio=0.990 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_4904 PE=4 SV=1 ;
EVALUE=1e-61 ; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DPY7|L0DPY7_SINAD ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_7395 PE=4 SV=1 ;
EVALUE=2e-58 ; Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0D9Z6|L0D9Z6_SINAD ;
ALN/Q_length_ratio=1.005 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_1052 PE=4 SV=1 ;
EVALUE=4e-58 ; Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5T897|M5T897_9PLAN ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_02117 PE=4 SV=1 ; EVALUE=2e-46 ;
Q/S_length_ratio=0.871"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SMJ3|F0SMJ3_PLABD ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=Uncharacterized
protein OS=Planctomyces brasiliensis (strain ATCC 49424 /
DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_0125 PE=4 SV=1 ; EVALUE=2e-44 ;
Q/S_length_ratio=0.894"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5U7U6|M5U7U6_9PLAN ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_01032 PE=4 SV=1 ; EVALUE=8e-44 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F2ATN4|F2ATN4_RHOBT ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_03907 PE=4 SV=1 ; EVALUE=2e-43 ;
Q/S_length_ratio=0.923"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5U100|M5U100_9PLAN ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_03451 PE=4 SV=1 ; EVALUE=3e-43 ;
Q/S_length_ratio=0.815"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L7CDC2|L7CDC2_RHOBT ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula baltica SWK14
GN=RBSWK_04430 PE=4 SV=1 ; EVALUE=4e-43 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|K5E2B9|K5E2B9_RHOBT ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula baltica SH28
GN=RBSH_04631 PE=4 SV=1 ; EVALUE=4e-43 ;
Q/S_length_ratio=0.923"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|Q7UGA3|Q7UGA3_RHOBA ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=Putative
uncharacterized protein OS=Rhodopirellula baltica (strain
SH1) GN=RB8027 PE=4 SV=1 ; EVALUE=5e-43 ;
Q/S_length_ratio=0.875"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5SVC9|M5SVC9_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_06786 PE=4 SV=1 ; EVALUE=2e-42 ;
Q/S_length_ratio=0.809"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5RWF3|M5RWF3_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula maiorica SM1
GN=RMSM_03346 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=0.857"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M2AUF9|M2AUF9_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula europaea 6C
GN=RE6C_05647 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.927"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5UBY8|M5UBY8_9PLAN ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_05025 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.971"
/note="Pfam_scan:hit_1 (6..203);
Pfam:PF07638.6:Sigma70_ECF;
Pfam_type:Family;HMM_aln_Length:179; HMM_Length:185;
EVALUE:5.9e-39; BITSCORE: 133.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSLVPEGSIT IWLEQLKGGD PSAVEPLWNR YFTKLVTLAR NQLRSAPRAA ADEEDVALSA
61 FDSFCHRVAE NRFPRLEDRD DLWQVLFVIT TRKATGLVRR EMRQKRGCGR VVHASAAGSP
121 TQAYDALNSA VAPEPSPEFT AAIAEECELL LSLLGEGELR KVAICKMESY TNVEIAKKLG
181 RSVATVERKL ATIREIWERS INR
//