LOCUS VTR93007.1 621 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: PD40 protein.
ACCESSION LR593886-2308
PROTEIN_ID VTR93007.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_47070"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.456 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=5e-45 ;
Q/S_length_ratio=1.011"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.435 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=6e-40 ;
Q/S_length_ratio=1.465"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.382 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=7e-40 ;
Q/S_length_ratio=1.086"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.417 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=1.247"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D7N8|L0D7N8_SINAD ;
ALN/Q_length_ratio=0.472 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0215 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=1.187"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.314 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=1.947"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.473 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.515 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=1.008"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.254 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.237"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DDY6|L0DDY6_SINAD ;
ALN/Q_length_ratio=0.435 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2787 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.137"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.643 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=4e-35 ;
Q/S_length_ratio=1.396"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.390 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=1.288"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0D9N2|L0D9N2_SINAD ;
ALN/Q_length_ratio=0.942 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1558 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=0.692"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.488 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=0.858"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DD82|L0DD82_SINAD ;
ALN/Q_length_ratio=0.554 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2507 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=0.690"
/note="Pfam_scan:hit_1 (46..116);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:63; HMM_Length:71;
EVALUE:6.8e-10; BITSCORE: 38.4"
/note="Pfam_scan:hit_2 (139..191);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:2.5e-09; BITSCORE: 36.4"
/note="Pfam_scan:hit_3 (541..565); Pfam:PF07676.7:PD40;
Pfam_type:Repeat;HMM_aln_Length:16; HMM_Length:39;
EVALUE:0.036; BITSCORE: 13.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPTHTLSAVV SRVRRAALGA APNVRTDGGL LGAFLADRDS DAFAELVARF GPMVFAVCRR
61 LTGHHQDAED AFQAAFVVLA RKAGSVSPRE AVGVWLYGVA VRTAREARAV ASKRRTREVP
121 TDRLPDVARA EQQPDDTGTV LHEELAGLPE KFRALLVLCD LEGRPQVEVA DRLELPVGTV
181 YSRLATARRL LAERLRQRGV ALPVCGLSVW LASTARATVP AELSAKAVTA AVAPDSVPAA
241 VAALTLRVLQ TMSLHKLNVV AAGGLVLVLG WVIAECLTGG GFAQEPPRPA AVETKKVDEP
301 KPQPAPKKAG PGTLLLTREG PFHVLTPDGK KVSEFSAPEK THGSGSGRLS PDGTRVAVVV
361 VEDGPPRATP PETWPFKVVV RTLGKLDSEK TWDLPAQNLN LNWTADGKRL VVVKHPDVEH
421 GKNVENLLLD PETGKTSTLD LPAGVQVLDC GKDGKTFLVT FAEEKKKKIG LAVLGDATVR
481 ELVEVPDWPP GGVTGRLSPD GTKVLFSAAD PERKNAHKWG LSHRPYLLDV KTKKAEPVPE
541 FPENGRVTGI AWAPDGRRIA YAWQQLHDEL LKKDQISAND AAIETEAFLV VADANGKNPK
601 TITSDKGPFA TNMIFGTIDW R
//