LOCUS VTR92679.1 520 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase alpha subunit domain
protein : DNA-directed RNA polymerase subunit alpha (Fragment)
OS=uncultured planctomycete GN=HGMM_F13D05C26 PE=4 SV=
1: TPR_11: TPR_2: RNA_pol_A_CTD: RNA_pol_A_CTD protein.
ACCESSION LR593886-1980
PROTEIN_ID VTR92679.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_50350"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|H5SDG8|H5SDG8_9BACT ;
ALN/Q_length_ratio=0.806 ; DESCRIPTION=DNA-directed RNA
polymerase subunit alpha (Fragment) OS=uncultured
planctomycete GN=HGMM_F13D05C26 PE=4 SV=1 ; EVALUE=1e-135
; Q/S_length_ratio=1.221"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DLP5|L0DLP5_SINAD ;
ALN/Q_length_ratio=0.840 ; DESCRIPTION=DNA-directed RNA
polymerase, alpha subunit/40 kD subunit OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_5630 PE=4 SV=1 ; EVALUE=1e-118 ;
Q/S_length_ratio=1.171"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8R0B5|E8R0B5_ISOPI ;
ALN/Q_length_ratio=0.837 ; DESCRIPTION=RNA polymerase
alpha subunit domain protein OS=Isosphaera pallida (strain
ATCC 43644 / DSM 9630 / IS1B) GN=Isop_1658 PE=4 SV=1 ;
EVALUE=1e-113 ; Q/S_length_ratio=1.161"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0SQH8|F0SQH8_PLABD ;
ALN/Q_length_ratio=0.827 ; DESCRIPTION=RNA polymerase
alpha subunit domain protein OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=Plabr_0324 PE=4 SV=1 ; EVALUE=1e-107 ;
Q/S_length_ratio=1.193"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A3ZPX9|A3ZPX9_9PLAN ;
ALN/Q_length_ratio=0.760 ; DESCRIPTION=Probable
DNA-directed RNA polymerase alpha chain OS=Blastopirellula
marina DSM 3645 GN=DSM3645_22711 PE=4 SV=1 ; EVALUE=1e-104
; Q/S_length_ratio=1.143"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A6BZY7|A6BZY7_9PLAN ;
ALN/Q_length_ratio=0.783 ; DESCRIPTION=Probable
DNA-directed RNA polymerase alpha chain OS=Planctomyces
maris DSM 8797 GN=PM8797T_22163 PE=4 SV=1 ; EVALUE=1e-101
; Q/S_length_ratio=1.253"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D5SQY2|D5SQY2_PLAL2 ;
ALN/Q_length_ratio=0.856 ; DESCRIPTION=RNA polymerase
alpha subunit domain protein OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_0602 PE=4 SV=1 ; EVALUE=1e-100 ;
Q/S_length_ratio=1.153"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|H5SDM2|H5SDM2_9BACT ;
ALN/Q_length_ratio=0.840 ; DESCRIPTION=DNA-directed RNA
polymerase subunit alpha OS=uncultured planctomycete
GN=HGMM_F14B06C02 PE=4 SV=1 ; EVALUE=1e-100 ;
Q/S_length_ratio=1.182"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M2AW92|M2AW92_9PLAN ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase
alpha subunit domain protein OS=Rhodopirellula europaea 6C
GN=RE6C_02360 PE=4 SV=1 ; EVALUE=1e-99 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K5DGY0|K5DGY0_RHOBT ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase
alpha subunit domain protein OS=Rhodopirellula baltica
SH28 GN=RBSH_03019 PE=4 SV=1 ; EVALUE=1e-99 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L7CMU9|L7CMU9_RHOBT ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase
alpha subunit domain protein OS=Rhodopirellula baltica
SWK14 GN=RBSWK_00778 PE=4 SV=1 ; EVALUE=1e-99 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5SF99|M5SF99_9PLAN ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase
alpha subunit domain protein OS=Rhodopirellula europaea
SH398 GN=RESH_04585 PE=4 SV=1 ; EVALUE=1e-99 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|F2AX99|F2AX99_RHOBT ;
ALN/Q_length_ratio=0.881 ; DESCRIPTION=RNA polymerase
alpha subunit domain protein OS=Rhodopirellula baltica
WH47 GN=RBWH47_05135 PE=4 SV=1 ; EVALUE=4e-99 ;
Q/S_length_ratio=1.040"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|Q7UWL0|Q7UWL0_RHOBA ;
ALN/Q_length_ratio=0.881 ; DESCRIPTION=Probable
DNA-directed RNA polymerase alpha chain OS=Rhodopirellula
baltica (strain SH1) GN=rpoA PE=4 SV=1 ; EVALUE=4e-99 ;
Q/S_length_ratio=1.040"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5RFV7|M5RFV7_9PLAN ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase
subunit alpha domain-containing protein OS=Rhodopirellula
maiorica SM1 GN=RMSM_04807 PE=4 SV=1 ; EVALUE=1e-97 ;
Q/S_length_ratio=1.174"
/note="Pfam_scan:hit_1 (231..298); Pfam:PF13414.1:TPR_11;
Pfam_type:Repeat;HMM_aln_Length:68; HMM_Length:69;
EVALUE:6.3e-12; BITSCORE: 44.9"
/note="Pfam_scan:hit_2 (302..334); Pfam:PF07719.12:TPR_2;
Pfam_type:Repeat;HMM_aln_Length:31; HMM_Length:34;
EVALUE:9.7e-06; BITSCORE: 25.1"
/note="Pfam_scan:hit_3 (356..423);
Pfam:PF03118.10:RNA_pol_A_CTD;
Pfam_type:Domain;HMM_aln_Length:58; HMM_Length:67;
EVALUE:1.2e-22; BITSCORE: 79.0"
/note="Pfam_scan:hit_4 (445..512);
Pfam:PF03118.10:RNA_pol_A_CTD;
Pfam_type:Domain;HMM_aln_Length:61; HMM_Length:67;
EVALUE:1.2e-20; BITSCORE: 72.7"
/note="GO_domain:GO:0044281"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0016779"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0005730"
/note="Enzyme_Code:EC:2.7.7.6"
BEGIN
1 MPIFGTARYF RRFSRDLPTR GKVRLVSGVA PLLSFVDTRP SAGRDACSAE HGRRSGDQWG
61 PDVTESLIDL RALLVEREDF EGGMVGRLRE GLAQGGPQVR ALKDIIDTLT KRLAVAAPPQ
121 QKKIHLKLGV ANYFLGHVRV AVDNLLKAEG PLAAFFLGQA HVTLGQSRQY AEDGADTTDH
181 YDAAVKAFER AEKSGYAPQS VQLQRAGVLR LQGHLGESKT ILAKLKDAAA HNAEYYYQEG
241 ALAEAEGDIP RAAKYFERAV ELEPRHSAAL FRLGFLNDQQ GNDYEAIGYY ERCLKYPPVG
301 KGVLYNLGVL YEDNDMYDKA ADCYRRLAKA DPRDERAKLF VKDSEASLSM HYDPEDEQLS
361 QANRVVLEIP ITDFELSVRS RNCLKRMNIR TLGDLTRVTE SQLLASKNFG ETSLEEIKII
421 MNAKQLRIGQ SLDQGQQYEF RYRPQQNLSP EEQATLNKPV SDLNLSVRAR KCMNRLNIGT
481 LGELVQRTAD ELLEAKNFGQ TSLTEVRERL GQFNLKLRGD
//